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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dravet syndrome Myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
GABRA1(2), SCN1A(6), STXBP1(3)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. Cluster 47 →
Adult myoclonic epilepsy Myoclonic epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
RAPGEF2(3), TNRC6A(3), SAMD12(3)
0.100 0.375 1.85e-7 1.23e-6 ✓ sig. —
Generalized epilepsy with febrile seizures plus Lennox-gastaut syndrome
3 genes
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3 of 3 corroborated by 2+ sources
GABRG2(3), SCN1A(8), SCN2A(2)
0.115 0.250 2.01e-7 1.34e-6 ✓ sig. Cluster 47 →
familial sleep-related hypermotor epilepsy Frontal lobe epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
CHRNB2(3), CHRNA4(3)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 273 →
Benign neonatal-infantile seizures Epilepsy of infancy with migrating focal seizures
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(3)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Familial temporal lobe epilepsy Temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
CPA6(5), RELN(4), GAL(4)
0.079 0.429 3.12e-7 2.00e-6 ✓ sig. —
Benign adult familial myoclonic epilepsy Benign myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ADRA2B(2), SAMD12(3)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 357 →
Ataxia Idiopathic generalized epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
GABRA1(3), CACNB4(2), SLC2A1(2)
0.097 0.250 4.77e-7 2.97e-6 ✓ sig. Cluster 47 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Macrogyria
4 genes
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CASK(1), SEPSECS(1), KIAA0586(1), TUBA1A(1)
0.065 0.138 5.73e-7 3.50e-6 ✓ sig. Cluster 110 →
Adult myoclonic epilepsy Benign adult familial myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ADRA2B(2), SAMD12(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 357 →
Early onset vitamin b6 dependent epilepsy Pyridoxine dependent epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ALDH7A1(4), PLPBP(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
ATAD3A(4), TSEN54(7), SEPSECS(5), RARS2(6)
0.063 0.129 7.57e-7 4.54e-6 ✓ sig. —
progressive myoclonus epilepsy Unverricht-lundborg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SCARB2(3), PRICKLE1(3)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 329 →
Benign neonatal epilepsy Malignant migrating partial seizures of infancy
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(2)
0.167 0.500 1.82e-6 1.02e-5 ✓ sig. —
Benign neonatal epilepsy Epilepsy of infancy with migrating focal seizures
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(4), SCN2A(3)
0.167 0.500 1.82e-6 1.02e-5 ✓ sig. —
Myoclonic epilepsy with ragged red fibers Progressive external ophthalmoplegia
2 genes
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2 of 2 corroborated by 2+ sources
IL1A(2), IL1B(2)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 32 →
Mitochondrial myopathy Myoclonic epilepsy with ragged red fibers
2 genes
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2 of 2 corroborated by 2+ sources
IL1A(2), IL1B(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. Cluster 32 →
Generalized epilepsy Myoclonic epilepsy
4 genes
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3 of 4 corroborated by 2+ sources
GABRA2(1), JRK(3), SCN1A(3), CACNB4(3)
0.047 0.167 2.88e-6 1.56e-5 ✓ sig. —
Benign infantile epilepsy Malignant migrating partial seizures of infancy
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(2)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Benign infantile epilepsy Epilepsy of infancy with migrating focal seizures
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(3)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Generalized epilepsy with febrile seizures plus Temporal lobe epilepsy
3 genes
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2 of 3 corroborated by 2+ sources
ANO4(1), CPA6(4), RELN(2)
0.064 0.188 4.93e-6 2.56e-5 ✓ sig. —
Hemangiosarcoma Temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), TEK(2), KDR(2)
0.061 0.167 7.16e-6 3.62e-5 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Congenital hypoplasia of part of brain
3 genes
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CASK(1), SEPSECS(1), KIAA0586(1)
0.059 0.176 7.80e-6 3.93e-5 ✓ sig. Cluster 110 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Congenital brain malformation
3 genes
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CASK(1), SEPSECS(1), KIAA0586(1)
0.059 0.176 7.80e-6 3.93e-5 ✓ sig. Cluster 110 →
Skin ulcer Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
NGF(2), FGF2(2)
0.118 0.333 8.34e-6 4.16e-5 ✓ sig. Cluster 330 →

Showing 25 of 420 matching pairs, sorted by significance (ascending). Click a column header to sort.