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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Macrothrombocytopenia Platelet disorder
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(2), TPM4(2)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. Cluster 33 →
Cushing's disease Giant cell glioblastoma
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), PPARG(2)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. —
Erythrocytosis Hereditary hemolytic anemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(6), BPGM(3)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. Cluster 105 →
Essential thrombocythemia Stomatitis
2 genes
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1 of 2 corroborated by 2+ sources
IFNA2(1), VWF(2)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. —
Digestive system disease Intestinal vascular insufficiency
2 genes
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C2orf80(1), NEDD9(1)
0.021 1.000 3.61e-5 1.66e-4 ✓ sig. —
Bile acid malabsorption Cognition disorder
2 genes
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2 of 2 corroborated by 2+ sources
SLC10A2(5), SLC51B(4)
0.036 0.667 3.61e-5 1.66e-4 ✓ sig. Cluster 351 →
Body weight Diabetic polyneuropathy
2 genes
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2 of 2 corroborated by 2+ sources
CDKAL1(2), FTO(2)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. Cluster 73 →
Body weight Synovitis
2 genes
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2 of 2 corroborated by 2+ sources
POMC(2), FTO(2)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Hepatic insufficiency Pulmonary edema
2 genes
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NOS3(1), MAPK14(1)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Congenital joint contractures Distal arthrogryposis
2 genes
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1 of 2 corroborated by 2+ sources
PIEZO2(4), RYR1(1)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Male infertility large polyploid spermatozoa Male infertility spermatogenesis disorder
2 genes
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2 of 2 corroborated by 2+ sources
DNHD1(2), AURKC(3)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Charge syndrome Male infertility spermatogenesis disorder
2 genes
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1 of 2 corroborated by 2+ sources
KMT2D(1), CHD7(7)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Cowden disease Vacterl association
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(6), KLLN(6)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Congenital anomaly of limb Urogenital abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
TGFB2(2), HOXA11(2)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Congenital cartilage disorder Intervertebral disc displacement
2 genes
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2 of 2 corroborated by 2+ sources
COL11A1(2), CHST3(2)
0.059 0.400 3.66e-5 1.68e-4 ✓ sig. —
Appendicitis Glucose-6-phosphate dehydrogenase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
IL10(2), IFNG(2)
0.059 0.400 3.66e-5 1.68e-4 ✓ sig. —
Ductal carcinoma of breast Hydronephrosis
2 genes
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2 of 2 corroborated by 2+ sources
PTGS2(2), PTGER1(2)
0.087 0.167 3.66e-5 1.68e-4 ✓ sig. —
Paralysis Postsynaptic congenital myasthenic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SCN4A(4), CHRND(4)
0.087 0.167 3.66e-5 1.68e-4 ✓ sig. —
Lipoma Urinary system neoplasms
2 genes
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TERT(1), ACTRT3(1)
0.087 0.167 3.66e-5 1.68e-4 ✓ sig. —
Brain infarction Obstructive sleep apnea syndrome
4 genes
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APOE(1), SLC35F3(1), HS3ST4(1), ATP10A(1)
0.035 0.111 3.68e-5 1.69e-4 ✓ sig. —
Absence epilepsy Ataxia
2 genes
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CACNA1A(1), CACNA2D2(1)
0.074 0.286 3.70e-5 1.70e-4 ✓ sig. Cluster 47 →
Hypercholesterolemia Vascular dementia
5 genes
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3 of 5 corroborated by 2+ sources
DOCK6(2), APOE(3), SREBF2(1), LPL(3), PON2(1)
0.029 0.109 3.83e-5 1.75e-4 ✓ sig. —
Brain aneurysm Dyslexia
6 genes
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CCDC171(1), HDAC9(1), RBFOX1(1), RBMS3(1), FHIT(1), ESRRG(1)
0.031 0.069 3.85e-5 1.76e-4 ✓ sig. —
Diffuse idiopathic skeletal hyperostosis Essential tremor
3 genes
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PIK3R1(1), CDC5L(1), SUPT3H(1)
0.028 0.273 3.85e-5 1.76e-4 ✓ sig. —
Bile acid malabsorption Delirium, dementia, and cognitive disorders
2 genes
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2 of 2 corroborated by 2+ sources
SLC10A2(5), SLC51B(3)
0.034 0.667 3.89e-5 1.78e-4 ✓ sig. Cluster 351 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.