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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hydrops fetalis Klippel-trenaunay syndrome
2 genes
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RASA1(1), CCNH(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. Cluster 40 →
Klippel-trenaunay syndrome Vacterl association
2 genes
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DLX5(1), SMOC1(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. —
Congenital fibrosis of extraocular muscles Epidermal nevus
2 genes
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1 of 2 corroborated by 2+ sources
HRAS(3), LRRC56(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. —
Female infertility Polycystic ovary syndrome
9 genes
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6 of 9 corroborated by 2+ sources
CHEK2(1), DENND1A(1), DMD(3), CYP19A1(2), LEP(2), TNRC6B(3), LHB(2), LIF(2), PROX1(1)
0.028 0.087 2.12e-5 1.00e-4 ✓ sig. —
Hyperuricemic nephropathy Polycystic liver disease
2 genes
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1 of 2 corroborated by 2+ sources
HNF1B(1), SEC61A1(3)
0.074 0.400 2.13e-5 1.01e-4 ✓ sig. Cluster 23 →
Fuchs endothelial dystrophy Polymorphous corneal dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
COL8A2(3), ZEB1(3)
0.074 0.400 2.13e-5 1.01e-4 ✓ sig. Cluster 75 →
Fuchs endothelial dystrophy Posterior polymorphous corneal dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
COL8A2(4), ZEB1(5)
0.074 0.400 2.13e-5 1.01e-4 ✓ sig. Cluster 75 →
Dravet syndrome Hepatic encephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
GABRG2(4), GABRA1(3)
0.095 0.250 2.14e-5 1.01e-4 ✓ sig. —
Hyperemia Turner syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS2(2)
0.095 0.250 2.14e-5 1.01e-4 ✓ sig. —
Hyperemia Occupational dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
KNG1(2), BDKRB2(2)
0.095 0.250 2.14e-5 1.01e-4 ✓ sig. Cluster 250 →
Hyperparathyroidism Hypocalcemia
2 genes
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2 of 2 corroborated by 2+ sources
PTH(2), CASR(7)
0.083 0.333 2.16e-5 1.02e-4 ✓ sig. —
Eyelid disease Neuropathy
2 genes
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EFEMP1(1), PNPT1(1)
0.083 0.333 2.16e-5 1.02e-4 ✓ sig. Cluster 146 →
Carpal tunnel syndrome Pelvic organ prolapse
6 genes
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1 of 6 corroborated by 2+ sources
FBN2(3), EFEMP1(1), LOXL1(1), WNT4(1), EVX2(1), LNPK(1)
0.030 0.095 2.16e-5 1.02e-4 ✓ sig. —
Hemorrhoid Leiomyoma
3 genes
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3 of 3 corroborated by 2+ sources
EGFR(2), ESR1(2), SMAD3(2)
0.031 0.300 2.18e-5 1.03e-4 ✓ sig. —
Amblyopia Strabismus
3 genes
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GALC(1), KMT2D(1), SLC9A6(1)
0.053 0.120 2.19e-5 1.03e-4 ✓ sig. Cluster 281 →
Aortic stenosis Brain aneurysm
5 genes
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FERD3L(1), POLR1F(1), MYEOV(1), BET1L(1), RNF144A(1)
0.035 0.083 2.19e-5 1.03e-4 ✓ sig. —
Emphysema Hemorrhage
3 genes
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2 of 3 corroborated by 2+ sources
SERPINA1(2), PLAU(2), TNFRSF8(1)
0.052 0.125 2.30e-5 1.08e-4 ✓ sig. —
Carpal tunnel syndrome Stickler syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL11A1(6), VCAN(2), COL11A2(2)
0.040 0.214 2.30e-5 1.08e-4 ✓ sig. —
Neural tube defects, folate-sensitive Neural tube defects, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), MTHFD1(2)
0.059 0.500 2.35e-5 1.11e-4 ✓ sig. —
Bowen’s disease Neuronal ceroid lipofuscinosis
2 genes
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2 of 2 corroborated by 2+ sources
TFAM(2), PPARGC1A(2)
0.059 0.500 2.35e-5 1.11e-4 ✓ sig. —
Hepatic insufficiency Occupational disease
2 genes
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2 of 2 corroborated by 2+ sources
ALB(2), TGFB1(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. —
Anencephaly Hyperhomocysteinemia
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), MTRR(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. Cluster 121 →
Hyperhomocysteinemia Intracellular cobalamin metabolism disorder
2 genes
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2 of 2 corroborated by 2+ sources
MTRR(3), MTR(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. —
Optic neuropathy Raynaud disease
2 genes
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1 of 2 corroborated by 2+ sources
NOS3(2), IFNA2(1)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. —
Arterial occlusive disease Intracranial hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. Cluster 123 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.