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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cervical disc degenerative disorder Mitochondrial myopathy
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), TNF(2)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. —
Hypoxia Sulfur amino acid metabolism disorder
2 genes
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2 of 2 corroborated by 2+ sources
ADK(2), AHCY(2)
0.057 0.667 1.33e-5 6.49e-5 ✓ sig. —
Hypoxia Intestinal perforation
2 genes
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2 of 2 corroborated by 2+ sources
NOS3(2), NOS1(2)
0.057 0.667 1.33e-5 6.49e-5 ✓ sig. —
Bouillaud’s disease Bronchitis
2 genes
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2 of 2 corroborated by 2+ sources
0.057 0.667 1.33e-5 6.49e-5 ✓ sig. Cluster 1 →
Pancreatitis Tropical calcific pancreatitis
2 genes
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2 of 2 corroborated by 2+ sources
CTRC(4), SPINK1(6)
0.034 1.000 1.35e-5 6.54e-5 ✓ sig. —
Angioedema Primary adrenal insufficiency
2 genes
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CUX1(1), MYL10(1)
0.034 1.000 1.35e-5 6.54e-5 ✓ sig. —
Focal glomerulosclerosis Nephrotic syndrome, steroid-resistant, autosomal recessive
2 genes
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AXDND1(1), NPHS2(1)
0.034 1.000 1.35e-5 6.54e-5 ✓ sig. —
Osteomyelitis Tongue neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
TERT(2), HLA-DQB1(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Eye disorder Synovitis
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(2), POMC(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. Cluster 11 →
Diabetic polyneuropathy Hypertensive heart disease
2 genes
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TCF7L2(1), FTO(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Deep vein thrombosis Disseminated intravascular coagulation
2 genes
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2 of 2 corroborated by 2+ sources
SERPINC1(2), PROC(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Combined pituitary hormone deficiency Septo-optic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
HESX1(6), OTX2(3)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. Cluster 218 →
Pituitary hormone deficiency Septo-optic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
HESX1(5), OTX2(4)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. Cluster 218 →
Head and neck cancer Osteomyelitis
2 genes
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2 of 2 corroborated by 2+ sources
TERT(2), HLA-DQB1(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. Cluster 1 →
Headache Optic neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
CSF3(2), IFNA2(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Hepatic insufficiency Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
NFE2L2(2), KEAP1(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Hypertensive heart disease Osteomyelitis
2 genes
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TCF7L2(1), FTO(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Aniridia Tooth abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
PAX6(4), PITX2(3)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Anencephaly Eye disorder
2 genes
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MTHFR(1), RPGRIP1L(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Arterial occlusive disease Brain edema
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. Cluster 123 →
Atrophy Splenic disease
2 genes
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2 of 2 corroborated by 2+ sources
CYP1A2(2), AHR(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Internet addiction disorder Language development disorders
3 genes
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2 of 3 corroborated by 2+ sources
ERBB4(1), FOXP2(3), NRXN1(3)
0.058 0.115 1.36e-5 6.60e-5 ✓ sig. Cluster 179 →
Keratoconus Marfan syndrome
5 genes
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4 of 5 corroborated by 2+ sources
COL5A1(3), SMAD3(2), COL1A1(3), LOX(2), COL5A2(1)
0.033 0.116 1.38e-5 6.66e-5 ✓ sig. Cluster 12 →
Myopathic ophthalmopathy Vogt-koyanagi-harada disease
2 genes
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2 of 2 corroborated by 2+ sources
IL23R(2), PTPN22(2)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. —
Congestive ophthalmopathy Vogt-koyanagi-harada disease
2 genes
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2 of 2 corroborated by 2+ sources
IL23R(2), PTPN22(2)
0.105 0.286 1.38e-5 6.66e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.