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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bouillaud’s disease Narcolepsy
3 genes
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3 of 3 corroborated by 2+ sources
0.058 1.000 3.42e-8 2.58e-7 ✓ sig. Cluster 1 →
Diabetic cardiomyopathy Rhabdomyolysis
3 genes
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3 of 3 corroborated by 2+ sources
INS(2), ATP2A2(3), RYR2(3)
0.150 0.375 3.34e-8 2.52e-7 ✓ sig. Cluster 290 →
Autosomal recessive ataxia Peroxisome biogenesis disorder
3 genes
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3 of 3 corroborated by 2+ sources
PEX10(8), PEX16(8), PEX2(7)
0.111 0.600 3.32e-8 2.50e-7 ✓ sig. —
Hemorrhage Venous thrombosis
4 genes
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PLAU(1), F2(1), PLAT(1), F7(1)
0.093 0.182 3.26e-8 2.46e-7 ✓ sig. Cluster 55 →
Hyperinsulinemic hypoglycemia monogenic diabetes
3 genes
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3 of 3 corroborated by 2+ sources
ABCC8(4), KCNJ11(5), GCK(4)
0.158 0.300 3.25e-8 2.45e-7 ✓ sig. Cluster 36 →
Degenerative disorder Learning disorders
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2), HMOX1(2), APOD(2)
0.069 0.139 3.24e-8 2.45e-7 ✓ sig. —
Congenital insensitivity to pain Hereditary sensory and autonomic neuropathy
3 genes
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3 of 3 corroborated by 2+ sources
SCN11A(6), SCN9A(5), PRDM12(5)
0.130 0.500 3.18e-8 2.40e-7 ✓ sig. —
Hyperparathyroidism Rickets
3 genes
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3 of 3 corroborated by 2+ sources
VDR(2), PTH(2), PTH1R(2)
0.130 0.500 3.18e-8 2.40e-7 ✓ sig. —
Clear cell renal cell carcinoma Myeloproliferative disorder
6 genes
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1 of 6 corroborated by 2+ sources
TERT(2), MAD1L1(1), STN1(1), PMF1(1), PMF1-BGLAP(1), MYNN(1)
0.058 0.113 3.16e-8 2.39e-7 ✓ sig. —
Congenital brain malformation Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
SEPSECS(5), CHMP1A(5), AMPD2(6), TOE1(5)
0.089 0.235 3.14e-8 2.37e-7 ✓ sig. —
Congenital hypoplasia of part of brain Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
SEPSECS(5), CHMP1A(5), AMPD2(6), TOE1(5)
0.089 0.235 3.14e-8 2.37e-7 ✓ sig. —
Microgyria Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
SEPSECS(5), CHMP1A(5), AMPD2(6), TOE1(5)
0.089 0.235 3.14e-8 2.37e-7 ✓ sig. —
Nonsyndromic intellectual disability syndromic intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
CRADD(4), NSUN2(4), KIF1A(3), PPM1D(2), TAOK1(3), MED23(4), NAA20(3)
0.041 0.194 3.11e-8 2.35e-7 ✓ sig. —
Cleft palate and bilateral cleft lip Developmental delay
4 genes
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ND2(1), COX3(1), ND5(1), ND4(1)
0.082 0.286 3.10e-8 2.35e-7 ✓ sig. Cluster 32 →
Cleft palate Uranostaphyloschisis
5 genes
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2 of 5 corroborated by 2+ sources
MEIS2(1), TBX22(1), IRF6(2), SATB2(2), ARHGAP29(1)
0.063 0.208 3.04e-8 2.30e-7 ✓ sig. —
Disseminated intravascular coagulation Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
F2(2), PROC(2), F7(2)
0.158 0.333 3.03e-8 2.29e-7 ✓ sig. Cluster 55 →
Bone fragility with contractures, arterial rupture, and deafness Cole-carpenter syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CRTAP(3), P4HB(6), SEC24D(6)
0.060 1.000 3.03e-8 2.29e-7 ✓ sig. Cluster 68 →
Cole-carpenter syndrome Osteoporosis-pseudoglioma syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CRTAP(3), P4HB(6), SEC24D(6)
0.060 1.000 3.03e-8 2.29e-7 ✓ sig. Cluster 68 →
autosomal recessive primary microcephaly Congenital microcephaly
3 genes
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3 of 3 corroborated by 2+ sources
ASPM(2), CDK5RAP2(2), STIL(2)
0.091 0.750 2.95e-8 2.24e-7 ✓ sig. —
Sleep apnea Sleep disorder
4 genes
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BTBD9(1), SLC39A8(1), MEIS1(1), BFSP1(1)
0.070 0.364 2.94e-8 2.23e-7 ✓ sig. —
Congenital clubfoot Congenital hemivertebra
3 genes
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BLTP1(1), PKD1(1), INPP5E(1)
0.115 0.600 2.91e-8 2.20e-7 ✓ sig. —
Malnutrition Neural tube defect
3 genes
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3 of 3 corroborated by 2+ sources
MTHFR(2), CBS(2), MTR(2)
0.061 1.000 2.84e-8 2.16e-7 ✓ sig. —
Autoinflammatory syndrome Lymphoproliferative syndrome
4 genes
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4 of 4 corroborated by 2+ sources
XIAP(3), ITK(5), CD27(4), SH2D1A(3)
0.083 0.286 2.78e-8 2.11e-7 ✓ sig. —
Anhedonia Cognition disorder
5 genes
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5 of 5 corroborated by 2+ sources
COMT(2), CRH(2), DRD2(2), SLC6A4(2), CACNA1C(2)
0.066 0.192 2.73e-8 2.07e-7 ✓ sig. —
Rolandic epilepsy Unverricht-lundborg syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SCARB2(2), PRICKLE1(2), CSTB(5)
0.063 1.000 2.67e-8 2.03e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.