Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bicuspid aortic valve Keratosis palmoplantaris striata
2 genes
Show details
2 of 2 corroborated by 2+ sources
DSP(5), DSG1(2)
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Bestrophinopathy Neurodegeneration with brain iron accumulation
2 genes
Show details
2 of 2 corroborated by 2+ sources
BEST1(7), FTH1(5)
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Bronchial hyperreactivity Overactive bladder
2 genes
Show details
2 of 2 corroborated by 2+ sources
NGF(2), TRPA1(2)
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. Cluster 206 →
Autoimmune polyendocrine syndrome Cartilage disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. Cluster 1 →
Macrocytic anemia Pancytopenia
2 genes
Show details
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Congenital epicanthus Macrocytic anemia
2 genes
Show details
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Cleft palate and bilateral cleft lip Congenital fusion of ribs
2 genes
Show details
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Bestrophinopathy Distal myopathy
2 genes
Show details
2 of 2 corroborated by 2+ sources
BEST1(7), PRPH2(2)
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Anti-glomerular basement membrane disease Granulomatosis with polyangiitis
2 genes
Show details
2 of 2 corroborated by 2+ sources
HLA-DPB1(3), CTLA4(2)
0.118 0.500 4.60e-6 2.40e-5 ✓ sig. —
Diamond-blackfan anemia Pancytopenia
3 genes
Show details
3 of 3 corroborated by 2+ sources
IKZF1(4), EPO(4), RPL17(2)
0.061 0.214 4.57e-6 2.39e-5 ✓ sig. —
Kidney neoplasms Optic neuritis
3 genes
Show details
3 of 3 corroborated by 2+ sources
ATP7B(2), GSTT1(2), SOD2(2)
0.059 0.231 4.56e-6 2.39e-5 ✓ sig. —
Benign infantile epilepsy Epilepsy of infancy with migrating focal seizures
2 genes
Show details
2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(3)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Benign infantile epilepsy Malignant migrating partial seizures of infancy
2 genes
Show details
2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(2)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Cataract-microcornea syndrome Sutural cataract
2 genes
Show details
2 of 2 corroborated by 2+ sources
CRYBB2(3), GJA8(4)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. Cluster 43 →
Congenital joint contractures Contracture of multiple joints
2 genes
Show details
COL6A3(1), GLDN(1)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Curling ulcer Hepatic insufficiency
2 genes
Show details
2 of 2 corroborated by 2+ sources
TGFB1(2), NOS2(2)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Hypercalciuria Hypocalcemia
2 genes
Show details
2 of 2 corroborated by 2+ sources
POMC(2), PTH(2)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Hyperproinsulinemia Pituitary neoplasms
2 genes
Show details
2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.143 0.333 4.55e-6 2.38e-5 ✓ sig. —
Hypercapnia Hypoxia
2 genes
Show details
PDYN(1), NPPA(1)
0.059 1.000 4.45e-6 2.34e-5 ✓ sig. —
Peeling skin syndrome with leukonychia and acral punctate keratoses Uveitis
2 genes
Show details
2 of 2 corroborated by 2+ sources
CAST(7), ERAP1(2)
0.059 1.000 4.45e-6 2.34e-5 ✓ sig. —
Leukemia Lipoma
3 genes
Show details
PTEN(1), BAP1(1), ACTRT3(1)
0.057 0.250 4.39e-6 2.30e-5 ✓ sig. —
Erythromelalgia Hereditary sensory and autonomic neuropathy
2 genes
Show details
2 of 2 corroborated by 2+ sources
SCN11A(6), SCN9A(6)
0.095 0.667 4.32e-6 2.27e-5 ✓ sig. —
Hyperparathyroidism Hypoparathyroidism
2 genes
Show details
2 of 2 corroborated by 2+ sources
PTH(3), GCM2(6)
0.095 0.667 4.32e-6 2.27e-5 ✓ sig. —
B-lymphoblastic leukemia/lymphoma Myelogenous leukemia
2 genes
Show details
2 of 2 corroborated by 2+ sources
BCR(2), ABL1(2)
0.095 0.667 4.32e-6 2.27e-5 ✓ sig. —
Burkitt lymphoma Clonal cytopenia of undetermined significance
2 genes
Show details
2 of 2 corroborated by 2+ sources
RUNX1(2), ARID1A(2)
0.095 0.667 4.32e-6 2.27e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.