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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Carney complex Cowden disease
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(3), SDHC(3)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 81 →
Central nervous system non-hodgkin lymphoma Pulmonary alveolar proteinosis
2 genes
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1 of 2 corroborated by 2+ sources
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 1 →
Cowden disease Hemimegalencephaly
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(5), PIK3CA(7)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. —
Congenital arteriovenous malformation Congenital venous anomaly
2 genes
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EPHB4(1), TEK(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. —
Congenital deformity of clavicle Congenital joint contractures
2 genes
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GLDN(1), NEK9(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital joint contractures
2 genes
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GLDN(1), NEK9(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 59 →
Congenital deformity of forearm Congenital joint contractures
2 genes
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GLDN(1), NEK9(1)
0.133 0.286 6.37e-6 3.24e-5 ✓ sig. Cluster 59 →
Neurodegeneration with brain iron accumulation Neurodegenerative disorder
3 genes
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3 of 3 corroborated by 2+ sources
FTL(3), PANK2(3), FTH1(6)
0.057 0.214 6.25e-6 3.19e-5 ✓ sig. —
Coronary restenosis Heart valve disease
3 genes
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3 of 3 corroborated by 2+ sources
ACE(2), SPP1(2), ITGB2(2)
0.057 0.214 6.25e-6 3.19e-5 ✓ sig. —
Clear cell renal cell carcinoma Thyroid cancer
4 genes
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TERT(1), SLK(1), STN1(1), CNEP1R1(1)
0.047 0.118 6.24e-6 3.18e-5 ✓ sig. —
Necrosis Vascular dementia
6 genes
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6 of 6 corroborated by 2+ sources
APP(2), MGMT(2), LPL(2), MTHFR(2), PRNP(2), TNF(2)
0.034 0.109 6.09e-6 3.11e-5 ✓ sig. —
Autoimmune polyendocrine syndrome Thyroiditis
2 genes
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2 of 2 corroborated by 2+ sources
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Thyroiditis
2 genes
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2 of 2 corroborated by 2+ sources
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 1 →
Developmental venous anomaly Hydrops fetalis
2 genes
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RASA1(1), CCNH(1)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Congenital anomaly of limb
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), IRF6(2)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Brain stem neoplasms Breast neoplasms
2 genes
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CDK6(1), CDK4(1)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Autoimmune polyendocrine syndrome Lymphedema
2 genes
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2 of 2 corroborated by 2+ sources
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 1 →
Anterior polar cataract Congenital total cataract
2 genes
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2 of 2 corroborated by 2+ sources
CRYAA(3), CRYGB(3)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 43 →
Intestinal pseudo-obstruction Patent ductus arteriosus
2 genes
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1 of 2 corroborated by 2+ sources
TFAP2B(4), MYH11(1)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Carney-stratakis syndrome Pheochromocytoma
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(5), SDHD(5)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 81 →
Pheochromocytoma Von hippel-lindau syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(2), VHL(7)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Colobomatous optic disc macular atrophy chorioretinopathy syndrome Microphthalmia
2 genes
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1 of 2 corroborated by 2+ sources
SIX6(6), C14orf39(1)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. Cluster 56 →
Limb girdle muscular dystrophy Sarcoglycanopathies
2 genes
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2 of 2 corroborated by 2+ sources
SGCA(5), SGCG(6)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. Cluster 14 →
Cholangiocarcinoma Hepatic veno occlusive disease with immunodeficiency
2 genes
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2 of 2 corroborated by 2+ sources
SP140(2), SP110(7)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. —
Cardiofacial dysplasia Cholangiocarcinoma
2 genes
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2 of 2 corroborated by 2+ sources
PRKACB(5), PRKACA(5)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.