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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Gross motor development delay Sotos syndrome
2 genes
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1 of 2 corroborated by 2+ sources
SCN4A(1), NSD1(8)
0.091 0.400 1.29e-5 6.29e-5 ✓ sig. —
Gross motor development delay Hemiplegic migraine
2 genes
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1 of 2 corroborated by 2+ sources
CACNA1A(2), WDR45(1)
0.091 0.400 1.29e-5 6.29e-5 ✓ sig. —
Gastrointestinal disease Polycythemia, primary familial and congenital
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(2), JAK2(2)
0.059 0.667 1.25e-5 6.12e-5 ✓ sig. —
Familial polycythemia Gastrointestinal disease
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(2), JAK2(2)
0.059 0.667 1.25e-5 6.12e-5 ✓ sig. —
Gastrointestinal disease Hepatic vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), JAK2(2)
0.059 0.667 1.25e-5 6.12e-5 ✓ sig. —
Corneal astigmatism Glaucoma
8 genes
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1 of 8 corroborated by 2+ sources
BNC2(1), HERC2(1), VAV2(1), ADAMTS8(1), ANGPT1(3), FMNL2(1), LMO7(1), BICC1(1)
0.027 0.113 1.18e-5 5.76e-5 ✓ sig. Cluster 240 →
Malnutrition Neural tube defects, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), CBS(2)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Caudal regression syndrome Neural tube defects, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
FUZ(2), VANGL1(2)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
1p36.33 duplication syndrome Pontocerebellar hypoplasia
2 genes
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2 of 2 corroborated by 2+ sources
ATAD3A(5), ATAD3C(3)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Auditory neuropathy Riboflavin transporter deficiency
2 genes
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2 of 2 corroborated by 2+ sources
SLC52A3(2), SLC52A2(2)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Auditory neuropathy Spastic paraplegia, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
PLP1(3), RAB9B(1)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Hepatitis c induced liver cirrhosis Membranous glomerulonephritis
2 genes
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BTNL2(1), TSBP1(1)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. Cluster 1 →
Clonal hematopoiesis Idiopathic pulmonary fibrosis
5 genes
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3 of 5 corroborated by 2+ sources
RTEL1(4), TERT(4), ZNF318(1), ABCC10(1), STN1(4)
0.037 0.089 1.17e-5 5.72e-5 ✓ sig. —
Keratitis Wagr syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ELP4(1), PAX6(6)
0.080 0.500 1.17e-5 5.72e-5 ✓ sig. —
Epidermal nevus Hypophosphatemic rickets
2 genes
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1 of 2 corroborated by 2+ sources
HRAS(3), LRRC56(1)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. Cluster 18 →
Hypotrichosis simplex Peeling skin syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PSORS1C1(1), CDSN(7)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Testicular neoplasms Xeroderma pigmentosum
2 genes
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2 of 2 corroborated by 2+ sources
ERCC1(2), ERCC4(7)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Congenital structural myopathy Tubular aggregate myopathy
2 genes
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2 of 2 corroborated by 2+ sources
ORAI1(4), STIM1(4)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Prediabetes Stomach disease
2 genes
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2 of 2 corroborated by 2+ sources
PTPRN2(2), GCG(2)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Absence epilepsy Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(3), GABRB3(3)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. Cluster 47 →
Angina pectoris Varicose veins
2 genes
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1 of 2 corroborated by 2+ sources
MMP1(1), MMP9(2)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Epilepsy with myoclonic atonic seizures Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CHD2(3), SCN1A(3)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Thyroid disease Thyroid hormone metabolism disorder
2 genes
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2 of 2 corroborated by 2+ sources
SECISBP2(5), DIO1(4)
0.037 1.000 1.16e-5 5.70e-5 ✓ sig. —
Congenital cartilage disorder Skeletal dysplasia
3 genes
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2 of 3 corroborated by 2+ sources
SLC26A2(2), TRPV4(1), CHST3(2)
0.059 0.130 1.15e-5 5.65e-5 ✓ sig. —
Cervical disc degenerative disorder Nephrosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), COL1A1(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.