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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dupuytren contracture Primary angle closure glaucoma
3 genes
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GLIS3(1), EPDR1(1), SFRP4(1)
0.029 0.188 9.90e-5 3.51e-4 ✓ sig. —
Breast disease Triple negative breast cancer
2 genes
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CCDC91(1), PTHLH(1)
0.050 0.286 9.87e-5 3.50e-4 ✓ sig. —
Dysthymic disorder Panic disorder
2 genes
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CRH(1), MAOA(1)
0.050 0.286 9.87e-5 3.50e-4 ✓ sig. Cluster 156 →
Choroidal melanoma Uveal melanoma
2 genes
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TDP1(1), LSM3(1)
0.044 0.333 9.81e-5 3.48e-4 ✓ sig. —
Hemorrhagic disease Macrothrombocytopenia
2 genes
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2 of 2 corroborated by 2+ sources
TPM4(3), TUBB1(3)
0.065 0.182 9.67e-5 3.44e-4 ✓ sig. Cluster 33 →
Epiphyseal dysplasia Skeletal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
SLC26A2(4), COL1A1(1)
0.063 0.200 9.53e-5 3.39e-4 ✓ sig. —
Myelomonocytic leukemia Systemic mastocytosis
2 genes
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ASXL1(1), SRSF2(1)
0.063 0.200 9.53e-5 3.39e-4 ✓ sig. —
Middle aortic syndrome Moyamoya disease
2 genes
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2 of 2 corroborated by 2+ sources
NF1(2), RNF213(6)
0.031 0.500 9.52e-5 3.38e-4 ✓ sig. Cluster 77 →
Cerebral amyloid angiopathy Conduct disorder
4 genes
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PTPRD(1), SLC7A2(1), ADH1B(1), ADH1C(1)
0.033 0.077 9.51e-5 3.38e-4 ✓ sig. —
Cachexia Mouth disease
2 genes
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2 of 2 corroborated by 2+ sources
PTGS2(2), GDF15(2)
0.067 0.167 9.45e-5 3.36e-4 ✓ sig. —
Blepharoptosis Postsynaptic congenital myasthenic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CHRNE(3), CHRND(3)
0.067 0.167 9.45e-5 3.36e-4 ✓ sig. —
Blepharoptosis Cardiofaciocutaneous syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PTPN11(3), SOS1(2)
0.067 0.167 9.45e-5 3.36e-4 ✓ sig. Cluster 42 →
Down syndrome Tonic-clonic epilepsy
2 genes
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1 of 2 corroborated by 2+ sources
NTF3(2), SNAP25(1)
0.067 0.167 9.45e-5 3.36e-4 ✓ sig. —
Developmental delay syndromic intellectual disability
3 genes
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3 of 3 corroborated by 2+ sources
TRIO(2), KAT6A(2), MED13L(2)
0.042 0.083 9.36e-5 3.33e-4 ✓ sig. —
Combined immunodeficiency disease Pharyngeal disorder
3 genes
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3 of 3 corroborated by 2+ sources
IKZF1(2), FOXN1(3), CARMIL2(2)
0.041 0.097 9.25e-5 3.29e-4 ✓ sig. —
Fatty liver, alcoholic Trifunctional protein deficiency
2 genes
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1 of 2 corroborated by 2+ sources
HADHA(2), HADHB(1)
0.023 0.667 9.22e-5 3.28e-4 ✓ sig. —
Cholangitis Dentinogenesis imperfecta
2 genes
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2 of 2 corroborated by 2+ sources
ITGB6(2), COL1A1(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. —
Angle closure glaucoma Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS3(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. Cluster 21 →
Avascular necrosis of bone Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS3(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. Cluster 21 →
Hyperemia Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), ADIPOQ(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. —
Osteonecrosis of medial femoral condyle Pulmonary edema
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS3(2)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. Cluster 21 →
Congenital epicanthus Patent ductus arteriosus
2 genes
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ABCC9(1), PTPN11(1)
0.069 0.143 9.15e-5 3.26e-4 ✓ sig. —
Hemorrhoid Thoracic aortic aneurysm and aortic dissection
4 genes
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4 of 4 corroborated by 2+ sources
ELN(4), SMAD3(6), MYH11(6), COL5A2(2)
0.032 0.098 8.97e-5 3.20e-4 ✓ sig. —
Hyperopia Retinal detachment
4 genes
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1 of 4 corroborated by 2+ sources
PTPRN2(1), NOG(2), LAMA2(1), RDH5(1)
0.033 0.087 8.89e-5 3.17e-4 ✓ sig. —
Bronchiectasis Congestive ophthalmopathy
2 genes
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2 of 2 corroborated by 2+ sources
ICAM1(2), TNF(2)
0.069 0.154 8.89e-5 3.17e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.