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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Essential tremor Neuropathy
3 genes
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PSD3(1), TRIO(1), NAT2(1)
0.026 0.158 2.18e-4 5.99e-4 ✓ sig. —
Blepharoptosis Clinodactyly
2 genes
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ANKRD11(1), DMD(1)
0.056 0.111 2.18e-4 5.98e-4 ✓ sig. —
Myeloproliferative disorder Schizoaffective disorder
3 genes
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1 of 3 corroborated by 2+ sources
PDGFRB(1), MAD1L1(1), CALR(2)
0.035 0.088 2.14e-4 5.86e-4 ✓ sig. —
Dyskinesia Pruritus
2 genes
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2 of 2 corroborated by 2+ sources
PDYN(2), OPRM1(2)
0.053 0.154 2.11e-4 5.80e-4 ✓ sig. —
Basal ganglia disease Dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
DRD2(2), HTR2A(2)
0.053 0.154 2.11e-4 5.80e-4 ✓ sig. —
Byzanthine arch palate Hydrocephalus
2 genes
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PLOD1(1), FGFR2(1)
0.053 0.154 2.11e-4 5.80e-4 ✓ sig. —
Galloway-mowat syndrome Idiopathic steroid-resistant nephrotic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NUP107(5), NUP133(6)
0.051 0.167 2.08e-4 5.71e-4 ✓ sig. Cluster 30 →
Cerebral arteriovenous malformations Intracranial aneurysm
2 genes
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1 of 2 corroborated by 2+ sources
IL6(2), ENG(1)
0.056 0.133 2.02e-4 5.55e-4 ✓ sig. —
Congenital hypoplasia of kidney Hypospadias
2 genes
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1 of 2 corroborated by 2+ sources
KAT6B(1), EYA1(2)
0.041 0.250 2.01e-4 5.53e-4 ✓ sig. —
Cerebral hemorrhage Erectile dysfunction
3 genes
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3 of 3 corroborated by 2+ sources
BCL2L1(2), VEGFA(2), BCL2(2)
0.034 0.103 2.01e-4 5.52e-4 ✓ sig. —
Duodenal ulcer Hepatic insufficiency
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), NOS2(2)
0.044 0.222 2.00e-4 5.50e-4 ✓ sig. —
Esophageal disease Sleep disorder
2 genes
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APOE(1), SLC39A8(1)
0.050 0.182 2.00e-4 5.48e-4 ✓ sig. —
Combined oxidative phosphorylation deficiency Leukodystrophy
3 genes
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2 of 3 corroborated by 2+ sources
AIFM1(3), RAB33A(1), TOMM70(2)
0.033 0.115 1.99e-4 5.47e-4 ✓ sig. —
Developmental regression Sick sinus syndrome
2 genes
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MECP2(1), LMNA(1)
0.057 0.111 1.95e-4 5.37e-4 ✓ sig. —
Desmoid tumor Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Desmoid tumor Intellectual developmental disorder dysmorphic ocular microcephaly peripheral
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Desmoid tumor Familial adenomatous polyposis
1 gene
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1 of 1 corroborated by 2+ sources
APC(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 41 →
Dias-logan syndrome Intellectual developmental disorder hemoglobin persistence
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Diffuse nonepidermolytic palmoplantar keratoderma Epidermolytic palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 230 →
Deafness, onychodystrophy, osteodystrophy, impaired intellectual development, and seizures syndrome Digitrenocerebral syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 90 →
Digitrenocerebral syndrome Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 90 →
Dominantly inherited sensory neuropathy hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Dominantly inherited sensory neuropathy hereditary sensory and autonomic neuropathy type 7
1 gene
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1 of 1 corroborated by 2+ sources
SCN11A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Dopamine transporter deficiency syndrome Parkinsonism-dystonia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 392 →
Dysalbuminemic hyperthyroxinemia Hyperthyroxinemia
1 gene
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1 of 1 corroborated by 2+ sources
ALB(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.