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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
SH2B3-related immune system disorder Thrombocythemia
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
SH2B3-related immune system disorder Thrombocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Silverman-Handmaker type dyssegmental dysplasia Stuve-wiedemann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HSPG2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Intestinal polyps Sleep deprivation
1 gene
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PTGS1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
46,xx ovotesticular disorder of sex development SOX3-related X-linked pituitary hormone deficiency with or without intellectual developmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
SOX3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
spermatogenic failure 18 Tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAH1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 389 →
Breast implant-associated anaplastic large cell lymphoma STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Exanthema systemic lupus erythematosus related to C1QA
1 gene
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1 of 1 corroborated by 2+ sources
C1QA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Arginine-glycine amidinotransferase deficiency Fanconi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 99 →
ARHGAP29-related non-syndromic orofacial cleft Cleft lip with or without cleft palate
1 gene
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1 of 1 corroborated by 2+ sources
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 312 →
Ataxia with intention tremor and hypotonia Cerebellar dysfunction with variable cognitive and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
POU4F1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 204 →
Ateleiotic dwarfism Pituitary neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
GH1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 82 →
ATM-related cancer predisposition Cardiac valvular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ATM(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Atypical fanconi syndrome Congenital hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
HNF4A(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
atypical hemolytic-uremic syndrome with C3 anomaly Cold paroxysmal hemoglobinuria
1 gene
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1 of 1 corroborated by 2+ sources
C3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
atypical hemolytic-uremic syndrome with C3 anomaly Hemoglobinuria paroxysmal
1 gene
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1 of 1 corroborated by 2+ sources
C3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
atypical hemolytic-uremic syndrome with C3 anomaly Paroxysmal nocturnal hemoglobinuria
1 gene
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1 of 1 corroborated by 2+ sources
C3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Autism, x-linked Central apnea
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 61 →
Autism, x-linked Neonatal encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 61 →
Autism, x-linked X-linked myopathy with excessive autophagy
1 gene
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1 of 1 corroborated by 2+ sources
RPL10(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
autoimmune lymphoproliferative syndrome due to CTLA4 haploinsufficiency Idiopathic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
CTLA4(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Autoinflammation, antibody deficiency, and immune dysregulation Cold autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 192 →
Autoinflammation, immune dysregulation, and eosinophilia Breast implant-associated anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
JAK1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 3 →
Autosomal dominant sensorineural deafness Infantile neurological cutaneous and articular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 192 →
Autosomal dominant sensorineural deafness Cinca syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 192 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.