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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Tongue cancer Tonsil cancer
1 gene
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0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Intracranial arteriovenous malformation Toriello-carey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Cardiac rhythm disease Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 129 →
Encephalocraniocutaneous lipomatosis Trigonocephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 185 →
Vaginal neoplasms Vipoma
1 gene
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IFNA1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Factor v deficiency Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 37 →
Ameloblastoma Ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Anaplastic astrocytoma Ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Brachyolmia Verloes-bourguignon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LTBP3(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Geleophysic dysplasia Verloes-bourguignon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LTBP3(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Keratitis-ichthyosis-deafness syndrome Vohwinkel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hemophilia b Warfarin sensitivity
1 gene
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1 of 1 corroborated by 2+ sources
F9(8)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
12q14 microdeletion syndrome Well-differentiated liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Craniopharyngioma Weyers acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Digenic alport syndrome X-linked diffuse leiomyomatosis with alport syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A5(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 49 →
Cryohydrocytosis Xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Deafness with congenital onychodystrophy Zimmermann-laband syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 90 →
Doors syndrome Zimmermann-laband syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 90 →
Intellectual developmental disorder autism speech Intellectual developmental disorder speech autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
TBR1(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 275 →
Hemoglobin barts fetalis syndrome Intellectual developmental disorder hypotonic x-linked
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Digenic alport syndrome Intellectual disability, autism, speech apraxia, craniofacial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A3(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 49 →
Intestinal perforation Renovascular hypertension
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Arteriovenous malformations Intracranial arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Encephalocraniocutaneous lipomatosis Intracranial arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Ataxia with vitamin e deficiency Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
APOB(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 140 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.