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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital communicating hydrocephalus Microlissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
WDR81(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Bouillaud’s disease Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Hemiparkinsonism Juvenile parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC6(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 256 →
Hemiparkinsonism Juvenile-onset diabetes mellitus-central and peripheral neurodegeneration syndrome
1 gene
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DNAJC6(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Bilateral perisylvian polymicrogyria Heparin cofactor 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PI4KA(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 267 →
Combined immunodeficiency, enteropathy spectrum Heparin cofactor 2 deficiency
1 gene
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PI4KA(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 267 →
Gastrointestinal defects and immunodeficiency syndrome Heparin cofactor 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PI4KA(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 267 →
hereditary breast carcinoma Retinal vasculopathy with cerebral leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ATRIP(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Hydrolethalus syndrome Male infertility testicular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
KIF7(5)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 142 →
Ataxia with vitamin e deficiency Hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOB(5)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 140 →
Hypocalcemic vitamin d-dependent rickets Vitamin d deficiency
1 gene
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1 of 1 corroborated by 2+ sources
VDR(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
15q11.2 microdeletion syndrome lissencephaly spectrum disorders
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 176 →
Acne inversa Amyloid neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSEN1(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 116 →
Antithrombin deficiency Myoclonic epilepsy with ragged red fibers
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Aplasia cutis congenita with epibulbar dermoids Intracranial arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Aplasia cutis congenita with epibulbar dermoids Schimmelpenning-feuerstein-mims syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Bulbar palsy Riboflavin transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A3(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Multiminicore myopathy Rigid spine muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SELENON(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Activated pi3k-delta syndrome Roifman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CD(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 181 →
Anastomosing haemangioma Schwartz-jampel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GNA11(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Estrogen resistance Myelogenous leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CCDC170(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Glucocorticoid deficiency with achalasia Intellectual disability with strabismus syndrome
1 gene
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GMPPA(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 295 →
Coronary artery vasospasm Resistant hypertension
1 gene
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NOS3(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 315 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.