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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
atransferrinemia Iron deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
TF(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Atrophoderma vermiculata Common migraine
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 194 →
Atrophy Hyper-ige syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 205 →
Atrophy Lymphoproliferative disorder of natural killer cells
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 205 →
Atrophy STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 205 →
Atrophy hyper-IgE recurrent infection syndrome 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 205 →
Atypical absence epilepsy Childhood absence epilepsy
1 gene
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NPY(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Atypical fanconi syndrome monogenic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
HNF4A(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Autoimmune uveitis Delirium
1 gene
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CXCL8(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 76 →
Autoimmune uveitis Esotropia
1 gene
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1 of 1 corroborated by 2+ sources
CXCL8(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 76 →
autosomal recessive osteopetrosis 2 Bone resorption
1 gene
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1 of 1 corroborated by 2+ sources
TNFSF11(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 262 →
Avoidant restrictive food intake disorder Delirium
1 gene
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1 of 1 corroborated by 2+ sources
APOE(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
BBS10-related ciliopathy Saldino-noonan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BBS10(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Beckwith-wiedemann syndrome Hemihyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
IGF2(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Beta-ketothiolase deficiency Carbohydrate metabolism disease
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Bilateral frontoparietal polymicrogyria Perisylvian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADGRG1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
CBL-related disorder Myelomonocytic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CBL(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Angelman syndrome CDKL5 disorder
1 gene
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1 of 1 corroborated by 2+ sources
CDKL5(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 61 →
Central retinal vein occlusion Deep vein thrombosis
1 gene
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PROC(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Beckwith-wiedemann syndrome Cerebellar ataxia with deafness and narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Beckwith-wiedemann syndrome Cerebellar ataxia, deafness, and narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
cerebral arteriopathy, autosomal recessive, with subcortical infarcts and leukoencephalopathy 1 Common migraine
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Cerebrofaciothoracic dysplasia Tooth abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Cerebrovascular trauma Common migraine
1 gene
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1 of 1 corroborated by 2+ sources
PHACTR1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2F Tongue neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HSPB1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.