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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Becker muscular dystrophy Leiomyosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
DMD(5)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 213 →
Hypohidrotic ectodermal dysplasia Unverricht-lundborg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSTB(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Vitamin d deficiency Vitamin d dependent rickets
1 gene
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1 of 1 corroborated by 2+ sources
VDR(5)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Hereditary elliptocytosis Xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Follicular thyroid cancer Ovarian diseases
1 gene
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1 of 1 corroborated by 2+ sources
CGA(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Caudal regression syndrome Congenital omphalocele
1 gene
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PCSK5(1)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 94 →
Cholestasis Testicular neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ERCC1(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Chudley-mccullough syndrome Hereditary elliptocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(4)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 400 →
Anuria Renal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
AGT(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Rhegmatogenous retinal detachment Synovial sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
SS18(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 11 →
Desbuquois dysplasia Graft versus host disease
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(4)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 128 →
Extravasation of diagnostic and therapeutic materials Imerslund-grasbeck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AMN(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Focal cortical dysplasia Intellectual developmental disorder speech autism dysmorphic
1 gene
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TBR1(1)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
hearing loss, autosomal recessive Pericardium disorder
1 gene
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1 of 1 corroborated by 2+ sources
PTPRQ(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 278 →
Hepatitis c induced liver cirrhosis Pemphigus vulgaris
1 gene
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HLA-DRA(1)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 1 →
Hereditary elliptocytosis Hereditary xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
14q11.2 microduplication syndrome Dextrocardia
1 gene
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1 of 1 corroborated by 2+ sources
SUPT16H(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Acne inversa Hereditary hemorrhagic telangiectasia
1 gene
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1 of 1 corroborated by 2+ sources
PSEN1(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Ataxia with vitamin e deficiency Binge eating disorder
1 gene
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1 of 1 corroborated by 2+ sources
APOB(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 140 →
Binge eating disorder Hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOB(4)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 140 →
Binge eating disorder Imerslund-grasbeck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CUBN(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Bladder disease Epilepsy with myoclonic atonic seizures
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A1(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Bladder disease Extravasation of diagnostic and therapeutic materials
1 gene
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1 of 1 corroborated by 2+ sources
HRH1(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 250 →
Brown tendon sheath syndrome Torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Focal cortical dysplasia overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(4)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.