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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
combined immunodeficiency due to CD3gamma deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD3G(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
combined immunodeficiency due to DOCK8 deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK8(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
combined immunodeficiency due to LRBA deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
LRBA(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
combined immunodeficiency due to MALT1 deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
combined immunodeficiency due to STK4 deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
STK4(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
combined immunodeficiency due to ZAP70 deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
ZAP70(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Congenital insufficiency of mitral valve Narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
LMCD1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Dihydropyrimidinase deficiency Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
DPYS(5)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
dilated cardiomyopathy 1I Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DES(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
dilated cardiomyopathy 1JJ Wolff-parkinson-white syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1W Wolff-parkinson-white syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCL(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Distal myotilinopathy Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Dysgnathia complex Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
PRRX1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Birbeck granule deficiency Narcolepsy
1 gene
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1 of 1 corroborated by 2+ sources
CD207(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 1 →
Cardiac and skeletal myopathy Wolff-parkinson-white syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTN2(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 4 →
Narcolepsy Papillon-lefevre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTSC(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
purine nucleoside phosphorylase deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
PNP(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Caudate atrophy Memory disorders
1 gene
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TYROBP(1)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Cernunnos-XLF deficiency Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Childhood-onset autosomal recessive myopathy with external ophthalmoplegia Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MYH2(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Claudication Ischemic stroke
1 gene
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AGXT2(1)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Chronobiology disorder Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
NPAS2(3)
0.059 0.250 3.37e-3 4.37e-3 ✓ sig. —
Congenital lactic acidosis Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.059 0.250 3.37e-3 4.37e-3 ✓ sig. —
Macular and posterior pole degeneration Trichohepatoenteric syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SKIC2(8)
0.059 0.250 3.37e-3 4.37e-3 ✓ sig. —
1p36 deletion syndrome Wallerian degeneration
1 gene
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1 of 1 corroborated by 2+ sources
UBE4B(3)
0.059 0.250 3.37e-3 4.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.