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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Dihydropyrimidine dehydrogenase deficiency Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(6)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cardiac arrest dilated cardiomyopathy 1BB
1 gene
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1 of 1 corroborated by 2+ sources
DSG2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 4 →
Dkc1-related disorder Dyskeratosis congenita
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(7)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Cardiac arrest duane retraction syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CHN1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Arthritis Dysbiosis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 1 →
Dyskeratosis congenita dyskeratosis congenita, autosomal recessive 2
1 gene
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1 of 1 corroborated by 2+ sources
NHP2(6)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Dyskeratosis congenita dyskeratosis congenita, autosomal recessive 3
1 gene
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1 of 1 corroborated by 2+ sources
WRAP53(8)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Dyskeratosis congenita dyskeratosis congenita, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
DKC1(7)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 64 →
Early onset progressive leukoencephalopathy-central nervous system calcification-hearing loss-visual impairment syndrome Leukodystrophy
1 gene
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KARS1(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Early-onset progressive leukoencephalopathy-central nervous system calcification-deafness-visual impairment syndrome Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Distal renal tubular acidosis Hereditary xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Distal renal tubular acidosis Xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Distal renal tubular acidosis Hennekam syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCBE1(5)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Dystonia musculorum deformans Early-onset generalized limb-onset dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TOR1A(5)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 167 →
Early-onset generalized limb-onset dystonia Genetic torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TOR1A(4)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 167 →
Three-vessel coronary artery disease Thromboembolic pulmonary hypertension
1 gene
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1 of 1 corroborated by 2+ sources
ABO(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Chondrosarcoma Trichorhinophalangeal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(5)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Angiokeratoma Fabry disease
1 gene
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1 of 1 corroborated by 2+ sources
GLA(7)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 273 →
Childhood-onset epilepsy syndrome Epilepsy of infancy with migrating focal seizures
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(3)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Malignant migrating partial seizures of infancy
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Circadian rhythm sleep disorder Splenic disease
1 gene
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CNTN5(1)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Sitosterolemia Tubulointerstitial kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ABCG5(7)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Ellis-van creveld syndrome Sitosterolemia
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
neurometabolic disorder due to serine deficiency Osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
PHGDH(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.