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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital diaphragmatic hernia Cryptotria
1 gene
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FREM2(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Cryptotria Fraser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FREM2(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Catecholaminergic polymorphic ventricular tachycardia dilated cardiomyopathy 1BB
1 gene
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1 of 1 corroborated by 2+ sources
DSG2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 4 →
Catecholaminergic polymorphic ventricular tachycardia dilated cardiomyopathy 1JJ
1 gene
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1 of 1 corroborated by 2+ sources
LAMA4(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 4 →
Cryptorchidism Disorder of sex development
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Distal anoctaminopathy Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Cutis laxa Ehlers-Danlos syndrome, spondylocheirodysplastic type
1 gene
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1 of 1 corroborated by 2+ sources
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Eye abnormalities Ocular hypertension
2 genes
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1 of 2 corroborated by 2+ sources
CRPPA(3), SH3PXD2B(1)
0.031 0.118 1.31e-3 2.08e-3 ✓ sig. —
Cardiac arrest Coronary aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
KCNN2(2), NEBL(2)
0.035 0.077 1.32e-3 2.09e-3 ✓ sig. —
Anhedonia Esophageal atresia
2 genes
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ATP1A3(1), CACNA1C(1)
0.035 0.077 1.32e-3 2.09e-3 ✓ sig. —
Emery-dreifuss muscular dystrophy Estrogen resistance
1 gene
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1 of 1 corroborated by 2+ sources
ESR1(5)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Griscelli syndrome Hereditary elliptocytosis
1 gene
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1 of 1 corroborated by 2+ sources
MYO5A(7)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Ataxia with vitamin e deficiency Binge eating disorder
1 gene
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1 of 1 corroborated by 2+ sources
APOB(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 140 →
Binge eating disorder Hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOB(4)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 140 →
Binge eating disorder Imerslund-grasbeck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CUBN(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Bladder disease Epilepsy with myoclonic atonic seizures
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A1(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Bladder disease Extravasation of diagnostic and therapeutic materials
1 gene
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1 of 1 corroborated by 2+ sources
HRH1(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 250 →
Brown tendon sheath syndrome Torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TUBB4A(3)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Extravasation of diagnostic and therapeutic materials Imerslund-grasbeck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AMN(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Focal cortical dysplasia Intellectual developmental disorder speech autism dysmorphic
1 gene
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TBR1(1)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Anuria Renal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
AGT(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Rhegmatogenous retinal detachment Synovial sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
SS18(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. Cluster 11 →
14q11.2 microduplication syndrome Dextrocardia
1 gene
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1 of 1 corroborated by 2+ sources
SUPT16H(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Acne inversa Hereditary hemorrhagic telangiectasia
1 gene
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1 of 1 corroborated by 2+ sources
PSEN1(2)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —
Hypohidrotic ectodermal dysplasia Unverricht-lundborg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSTB(6)
0.100 0.333 1.36e-3 2.15e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.