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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Beta-ureidopropionase deficiency Infantile spasms
1 gene
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1 of 1 corroborated by 2+ sources
UPB1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 328 →
leukodystrophy, hypomyelinating, 16 Sleep disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 177 →
Leukoencephalopathy Trichothiodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AARS1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Copper overload cirrhosis loeys-dietz syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
SMAD2(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cardiovascular abnormalities Lymphedema-distichiasis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cardiovascular abnormalities Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
FOXC2(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Autoimmune lymphoproliferative disorder lymphoproliferative syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
ITK(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 18 →
Macrothrombocytopenia macrothrombocytopenia, isolated, 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
TUBB1(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 33 →
Infantile spasms medium chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADM(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 328 →
Meier-gorlin syndrome meier-gorlin syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
CDC45(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Ankylosis Meier-gorlin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Beare-stevenson cutis gyrata syndrome Meier-gorlin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Meier-gorlin syndrome meier-gorlin syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
ORC4(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 171 →
Meier-gorlin syndrome meier-gorlin syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
ORC6(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 171 →
Meier-gorlin syndrome meier-gorlin syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
CDT1(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 171 →
Meier-gorlin syndrome meier-gorlin syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
CDC6(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 171 →
Meier-gorlin syndrome meier-gorlin syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
GMNN(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 171 →
Ductal carcinoma Merkel cell carcinoma
1 gene
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MYC(1)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Demyelinating diseases Merkel cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MYC(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 3 →
Demyelinating diseases methionine adenosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAT1A(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
methylmalonic acidemia due to transcobalamin receptor defect Vitamin b12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD320(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 106 →
methylmalonic aciduria due to methylmalonyl-coa mutase deficiency Vitamin b12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
methylmalonic aciduria, cblA type Vitamin b12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMAA(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 106 →
Methylmalonyl-coa mutase deficiency Vitamin b12 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Microstomia Posterior subcapsular cataract
1 gene
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1 of 1 corroborated by 2+ sources
LEMD2(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.