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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bilateral perisylvian polymicrogyria Gastrointestinal defects and immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PI4KA(4)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 267 →
Bile duct cancer Chromosome 22q11.2 microdeletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Carnitine palmitoyltransferase deficiency Fatty acid metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
CPT1A(7)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 99 →
Benign mucous membrane pemphigoid with ocular involvement Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Bouillaud’s disease Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 1 →
Coronary artery vasospasm Resistant hypertension
1 gene
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NOS3(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 315 →
Coronary artery vasospasm Intestinal perforation
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 315 →
Coumarin resistance Warfarin sensitivity
1 gene
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1 of 1 corroborated by 2+ sources
CYP2C9(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Dermatitis herpetiformis Spinal cord compression
1 gene
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TNF(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 300 →
Dermatitis herpetiformis Desmoid tumor
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Leukocyte adhesion deficiency Leukocyte disorders
1 gene
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1 of 1 corroborated by 2+ sources
ITGB2(6)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 155 →
Cerebellar ataxia, impaired intellectual development, and dysequilibrium Microlissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
WDR81(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Intellectual disability with strabismus syndrome Triple a syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GMPPA(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 295 →
Intestinal perforation Resistant hypertension
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 315 →
Juvenile parkinsonism Juvenile-onset diabetes mellitus-central and peripheral neurodegeneration syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC6(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Early onset epilepsy with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
ATP6V0C(4)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Chromosome 22q11.2 microdeletion syndrome Myelogenous leukemia
1 gene
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1 of 1 corroborated by 2+ sources
BCR(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 131 →
Cleidocranial dysplasia Metaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
RUNX2(6)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Estrogen resistance Myelogenous leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CCDC170(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Glucocorticoid deficiency with achalasia Intellectual disability with strabismus syndrome
1 gene
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GMPPA(1)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 295 →
15q11.2 microdeletion syndrome lissencephaly spectrum disorders
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 176 →
Acne inversa Amyloid neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSEN1(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. Cluster 116 →
Antithrombin deficiency Myoclonic epilepsy with ragged red fibers
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Aplasia cutis congenita with epibulbar dermoids Intracranial arteriovenous malformation
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.