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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Erythrocytosis Secondary polycythemia
8 genes
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8 of 8 corroborated by 2+ sources
HBA1(6), HBA2(6), EPO(6), HBB(6), EPAS1(6), VHL(4), EGLN1(7), BPGM(4)
0.571 1.000 1.65e-26 4.41e-25 ✓ sig. Cluster 105 →
Atrial fibrillation Obstructive pulmonary disease
101 genes
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23 of 101 corroborated by 2+ sources
HMGA2(1), CASZ1(3), RREB1(1), ZFPM2(1), FGFR3(1), ATP2A2(1), AMPD3(1), CACNA1D(1), AFF3(1), AKAP6(3), BCAS3(1), BNC2(1) +89 more
0.076 0.181 1.70e-26 4.54e-25 ✓ sig. —
Amyotrophic lateral sclerosis Frontotemporal dementia
25 genes
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18 of 25 corroborated by 2+ sources
APOE(2), ERBB4(7), GRN(3), MOB3B(1), MOBP(3), OPTN(7), SETX(6), TREM2(2), UNC13A(4), ANG(8), C9orf72(5), CCNF(3) +13 more
0.068 0.417 2.33e-26 6.25e-25 ✓ sig. —
Congenital deformity of clavicle Congenital deformity of elbow
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of clavicle Congenital deformity of forearm
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of clavicle Congenital deformity of scapula
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of clavicle Congenital deformity of wrist
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of clavicle Congenital dislocation of elbow
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital deformity of forearm
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital deformity of scapula
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital deformity of wrist
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital dislocation of elbow
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of forearm Congenital deformity of scapula
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of forearm Congenital deformity of wrist
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of forearm Congenital dislocation of elbow
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of scapula Congenital deformity of wrist
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of scapula Congenital dislocation of elbow
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of wrist Congenital dislocation of elbow
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of clavicle Congenital glenohumeral joint dislocation
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of elbow Congenital glenohumeral joint dislocation
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of forearm Congenital glenohumeral joint dislocation
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of scapula Congenital glenohumeral joint dislocation
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Congenital deformity of wrist Congenital glenohumeral joint dislocation
7 genes
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ADGRG6(1), CNTNAP1(1), GLDN(1), NEK9(1), DNM2(1), ZBTB42(1), ADCY6(1)
0.875 1.000 2.46e-26 6.41e-25 ✓ sig. Cluster 59 →
Leber hereditary optic neuropathy Postaxial polydactyly
11 genes
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7 of 11 corroborated by 2+ sources
ND1(2), ND2(2), ATP6(2), COX3(2), ATP8(1), COX1(1), ND5(2), COX2(1), ND3(1), ND4(2), ND4L(2)
0.282 0.524 2.60e-26 6.78e-25 ✓ sig. Cluster 32 →
Global developmental delay Intellectual disability
28 genes
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5 of 28 corroborated by 2+ sources
FOXG1(1), AP4M1(2), GRIN2B(1), HERC2(1), KCNN2(1), NRXN1(1), SCN8A(1), TCF20(1), TCF4(1), FLNA(1), GRIA3(1), CTNNB1(3) +16 more
0.067 0.368 2.89e-26 7.51e-25 ✓ sig. Cluster 6 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.