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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Acrocallosal syndrome Pilosebaceous disorder
1 gene
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1 of 1 corroborated by 2+ sources
GLI3(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 142 →
Acromegaly Pituitary adenoma
1 gene
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1 of 1 corroborated by 2+ sources
AIP(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 82 →
Acromegaly Pituitary gigantism
1 gene
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1 of 1 corroborated by 2+ sources
AIP(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 82 →
Acroosteolysis Alagille syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH2(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Acroosteolysis Follicular cyst
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH2(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Acroosteolysis Myofibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRB(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Adrenoleukodystrophy Deafness, dystonia, and cerebral hypomyelination
1 gene
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1 of 1 corroborated by 2+ sources
ABCD1(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Agenesis of corpus callosum Corpus callosum agenesis neuronopathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A6(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Aicardi syndrome Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Alagille syndrome Follicular cyst
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH2(5)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Alpha-1 antichymotrypsin deficiency Hemolytic disease of fetus and newborn
1 gene
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1 of 1 corroborated by 2+ sources
RHD(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 302 →
Alpha-1 antichymotrypsin deficiency Rh isoimmunization
1 gene
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RHD(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 302 →
Amed syndrome Wernicke-korsakoff syndrome
1 gene
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ALDH2(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Ameloblastoma Anaplastic astrocytoma
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic astrocytoma Craniopharyngioma
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic astrocytoma Anaplastic oligodendroglioma
1 gene
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IDH2(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 304 →
Angiomatoid fibrous histiocytoma Desmoplastic small round cell tumor
1 gene
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EWSR1(1)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 35 →
Anisometropia Lipomatosis
1 gene
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1 of 1 corroborated by 2+ sources
PTEN(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 291 →
Amyloid polyneuropathy Apolipoprotein a-i deficiency
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —
17,20-lyase deficiency Bile duct calculus
1 gene
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CYP17A1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
17q11.2 microduplication syndrome Middle aortic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NF1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
17q11.2 microduplication syndrome Neurofibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
NF1(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 77 →
17q21.31 microdeletion syndrome Dysgenesis of corpus callosum
1 gene
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1 of 1 corroborated by 2+ sources
KANSL1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
22q13.3 deletion syndrome Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 112 →
22q13.3 deletion syndrome phelan-mcdermid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHANK3(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 112 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.