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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Combined oxidative phosphorylation deficiency Leukodystrophy
3 genes
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2 of 3 corroborated by 2+ sources
AIFM1(3), RAB33A(1), TOMM70(2)
0.033 0.115 1.99e-4 5.47e-4 ✓ sig. —
Esophageal disease Sleep disorder
2 genes
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APOE(1), SLC39A8(1)
0.050 0.182 2.00e-4 5.48e-4 ✓ sig. —
Duodenal ulcer Hepatic insufficiency
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), NOS2(2)
0.044 0.222 2.00e-4 5.50e-4 ✓ sig. —
Cerebral hemorrhage Erectile dysfunction
3 genes
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3 of 3 corroborated by 2+ sources
BCL2L1(2), VEGFA(2), BCL2(2)
0.034 0.103 2.01e-4 5.52e-4 ✓ sig. —
Congenital hypoplasia of kidney Hypospadias
2 genes
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1 of 2 corroborated by 2+ sources
KAT6B(1), EYA1(2)
0.041 0.250 2.01e-4 5.53e-4 ✓ sig. —
Cerebral arteriovenous malformations Intracranial aneurysm
2 genes
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1 of 2 corroborated by 2+ sources
IL6(2), ENG(1)
0.056 0.133 2.02e-4 5.55e-4 ✓ sig. —
Galloway-mowat syndrome Idiopathic steroid-resistant nephrotic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NUP107(5), NUP133(6)
0.051 0.167 2.08e-4 5.71e-4 ✓ sig. Cluster 30 →
Byzanthine arch palate Hydrocephalus
2 genes
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PLOD1(1), FGFR2(1)
0.053 0.154 2.11e-4 5.80e-4 ✓ sig. —
Dyskinesia Pruritus
2 genes
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2 of 2 corroborated by 2+ sources
PDYN(2), OPRM1(2)
0.053 0.154 2.11e-4 5.80e-4 ✓ sig. —
Basal ganglia disease Dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
DRD2(2), HTR2A(2)
0.053 0.154 2.11e-4 5.80e-4 ✓ sig. —
Myeloproliferative disorder Schizoaffective disorder
3 genes
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1 of 3 corroborated by 2+ sources
PDGFRB(1), MAD1L1(1), CALR(2)
0.035 0.088 2.14e-4 5.86e-4 ✓ sig. —
Blepharoptosis Clinodactyly
2 genes
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ANKRD11(1), DMD(1)
0.056 0.111 2.18e-4 5.98e-4 ✓ sig. —
Essential tremor Neuropathy
3 genes
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PSD3(1), TRIO(1), NAT2(1)
0.026 0.158 2.18e-4 5.99e-4 ✓ sig. —
Aortic stenosis Major salivary gland carcinoma
2 genes
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MYMK(1), SLC2A6(1)
0.031 0.333 2.22e-4 6.08e-4 ✓ sig. —
Erectile dysfunction Lipoprotein lipase deficiency
3 genes
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1 of 3 corroborated by 2+ sources
SLC39A8(1), VEGFA(3), TDRD15(1)
0.034 0.100 2.23e-4 6.10e-4 ✓ sig. —
Benign prostatic hyperplasia Head and neck cancer
2 genes
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TERT(1), CLPTM1L(1)
0.045 0.200 2.23e-4 6.12e-4 ✓ sig. —
Osteolysis Otosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), TNFSF11(2)
0.035 0.286 2.23e-4 6.13e-4 ✓ sig. —
Generalized anxiety disorder Retinal detachment
3 genes
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1 of 3 corroborated by 2+ sources
FRAS1(1), MAPT(1), EYS(2)
0.036 0.075 2.28e-4 6.25e-4 ✓ sig. —
Emphysema Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), NFE2L2(2)
0.044 0.200 2.36e-4 6.48e-4 ✓ sig. —
Congenital aniridia Desmoplastic small round cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
WT1(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 35 →
Cone dystrophy, x-linked Deuteranomaly
1 gene
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1 of 1 corroborated by 2+ sources
OPN1MW(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 214 →
Cone monochromatism Deuteranomaly
1 gene
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1 of 1 corroborated by 2+ sources
OPN1MW(2)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 214 →
Deuteranomaly X-linked cone dysfunction syndrome with myopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1MW(3)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 214 →
Developmental delay with language impairment and movement disorder Intellectual developmental disorder autism speech
1 gene
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1 of 1 corroborated by 2+ sources
TBR1(4)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. Cluster 275 →
Camurati-engelmann syndrome Diaphyseal bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
TGFB1(6)
0.250 0.500 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.