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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hypotrichosis simplex Rheumatic disease
2 genes
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2 of 2 corroborated by 2+ sources
PSORS1C1(2), CDSN(3)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Raynaud disease Thyrotoxic periodic paralysis
2 genes
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C6orf15(1), ZFHX3(1)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Combined oxidative phosphorylation deficiency Mitochondrial encephalomyopathy
3 genes
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3 of 3 corroborated by 2+ sources
MTRFR(6), FARS2(6), MRPS25(4)
0.037 0.188 4.43e-5 2.01e-4 ✓ sig. Cluster 50 →
Cervical polyp Female infertility
2 genes
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IRAK1BP1(1), MEI4(1)
0.019 1.000 4.43e-5 2.01e-4 ✓ sig. —
autosomal dominant polycystic kidney disease Polycystic liver disease
2 genes
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2 of 2 corroborated by 2+ sources
ALG8(5), PKD2(2)
0.069 0.286 4.46e-5 2.03e-4 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Pemphigus vulgaris
2 genes
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0.069 0.286 4.46e-5 2.03e-4 ✓ sig. Cluster 1 →
Renal cysts and diabetes syndrome Testicular carcinoma
2 genes
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2 of 2 corroborated by 2+ sources
HNF1B(6), GATA4(2)
0.032 0.667 4.47e-5 2.03e-4 ✓ sig. —
Renal cysts and diabetes syndrome Testicular germ cell tumor
2 genes
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2 of 2 corroborated by 2+ sources
HNF1B(6), GATA4(2)
0.032 0.667 4.47e-5 2.03e-4 ✓ sig. —
Congenital cerebellar ataxia Spinocerebellar ataxia
2 genes
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2 of 2 corroborated by 2+ sources
GRID2(6), GRM1(6)
0.019 1.000 4.52e-5 2.05e-4 ✓ sig. —
Patent ductus arteriosus Tricuspid valve disease
2 genes
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MYH11(1), PTPN11(1)
0.080 0.200 4.53e-5 2.06e-4 ✓ sig. —
Angelman syndrome Rett syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CDKL5(5), MECP2(7)
0.080 0.200 4.53e-5 2.06e-4 ✓ sig. Cluster 61 →
Male infertility spermatogenesis disorder Swyer syndrome
2 genes
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DHX37(1), CHD7(1)
0.080 0.200 4.53e-5 2.06e-4 ✓ sig. —
Spondyloepiphyseal dysplasia Synovitis
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(8), WWP2(2)
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Congenital heart septal defect Imperforate anus
2 genes
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2 of 2 corroborated by 2+ sources
PCSK5(2), ROBO1(2)
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Bronchial disease Cardiac conduction disease
2 genes
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2 of 2 corroborated by 2+ sources
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Hepatic insufficiency Uremia
2 genes
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2 of 2 corroborated by 2+ sources
NOS3(2), TGFB1(2)
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Microcephaly Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TRMT10A(7), PPP1R15B(6)
0.019 1.000 4.69e-5 2.13e-4 ✓ sig. Cluster 101 →
Male breast carcinoma Triple negative breast cancer
2 genes
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MLLT10(1), CCDC170(1)
0.053 0.400 4.71e-5 2.14e-4 ✓ sig. —
Berardinelli-seip congenital lipodystrophy Epithelial ovarian carcinoma
2 genes
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2 of 2 corroborated by 2+ sources
FOS(2), CAV1(2)
0.061 0.333 4.76e-5 2.16e-4 ✓ sig. Cluster 71 →
Salivary gland neoplasms Weber-cockayne syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KRT5(2), ITGB4(2)
0.043 0.500 4.77e-5 2.16e-4 ✓ sig. —
Leigh syndrome Thiamine metabolism dysfunction syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SLC25A19(4), TPK1(4)
0.019 1.000 4.78e-5 2.17e-4 ✓ sig. —
Encephalopathy due to mitochondrial and peroxisomal fission defect Leigh syndrome
2 genes
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2 of 2 corroborated by 2+ sources
DNM1L(3), MFF(2)
0.019 1.000 4.78e-5 2.17e-4 ✓ sig. —
Anhydramnios Renal agenesis
2 genes
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1 of 2 corroborated by 2+ sources
EYA1(1), GREB1L(2)
0.080 0.182 4.85e-5 2.19e-4 ✓ sig. —
Melanocytic nevus Uterine prolapse
2 genes
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MAFF(1), PLA2G6(1)
0.080 0.182 4.85e-5 2.19e-4 ✓ sig. —
Hemimegalencephaly Meningioma
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(3), PIK3CA(2)
0.067 0.286 4.87e-5 2.20e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.