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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Latent autoimmune diabetes in adults Ocular sarcoidosis
3 genes
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HLA-DQA1(1), HLA-DQB1(1), PFKFB3(1)
0.044 0.250 1.09e-5 5.36e-5 ✓ sig. Cluster 1 →
Charge syndrome Kabuki syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KMT2D(8), KDM6A(7)
0.118 0.222 1.09e-5 5.37e-5 ✓ sig. —
Cerebellar atrophy Hydrolethalus syndrome
2 genes
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1 of 2 corroborated by 2+ sources
HYLS1(7), PUS3(1)
0.063 0.667 1.10e-5 5.41e-5 ✓ sig. —
Amyloidosis Learning disorders
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), ACHE(2)
0.057 0.158 1.11e-5 5.45e-5 ✓ sig. —
Larsen syndrome Pseudoxanthoma elasticum
2 genes
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2 of 2 corroborated by 2+ sources
XYLT1(2), XYLT2(2)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Congenital hemivertebra Micrognathism
2 genes
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BLTP1(1), INPP5E(1)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Coffin-siris syndrome Intellectual developmental disorder speech dysmorphic
2 genes
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2 of 2 corroborated by 2+ sources
SMARCA2(4), SOX4(6)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Eye abnormalities Schizencephaly
2 genes
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2 of 2 corroborated by 2+ sources
SHH(2), COL4A1(2)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Diabetic cardiomyopathy Pancreatic diseases
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), LEPR(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Curling ulcer Hyperemia
2 genes
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2 of 2 corroborated by 2+ sources
PTGS2(2), NOS2(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Cervical disc degenerative disorder Nephrosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), COL1A1(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Ovarian mucinous adenocarcinoma Testicular disease
2 genes
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INHBB(1), PAX8(1)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Congenital thyroid atrophy Testicular disease
2 genes
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2 of 2 corroborated by 2+ sources
PAX8(2), IGSF1(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. Cluster 88 →
Congenital hypothyroidism without goiter Testicular disease
2 genes
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2 of 2 corroborated by 2+ sources
PAX8(2), IGSF1(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. Cluster 88 →
Congenital cartilage disorder Skeletal dysplasia
3 genes
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2 of 3 corroborated by 2+ sources
SLC26A2(2), TRPV4(1), CHST3(2)
0.059 0.130 1.15e-5 5.65e-5 ✓ sig. —
Thyroid disease Thyroid hormone metabolism disorder
2 genes
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2 of 2 corroborated by 2+ sources
SECISBP2(5), DIO1(4)
0.037 1.000 1.16e-5 5.70e-5 ✓ sig. —
Testicular neoplasms Xeroderma pigmentosum
2 genes
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2 of 2 corroborated by 2+ sources
ERCC1(2), ERCC4(7)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Epidermal nevus Hypophosphatemic rickets
2 genes
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1 of 2 corroborated by 2+ sources
HRAS(3), LRRC56(1)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. Cluster 18 →
Hypotrichosis simplex Peeling skin syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PSORS1C1(1), CDSN(7)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Absence epilepsy Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(3), GABRB3(3)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. Cluster 47 →
Angina pectoris Varicose veins
2 genes
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1 of 2 corroborated by 2+ sources
MMP1(1), MMP9(2)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Prediabetes Stomach disease
2 genes
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2 of 2 corroborated by 2+ sources
PTPRN2(2), GCG(2)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Epilepsy with myoclonic atonic seizures Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CHD2(3), SCN1A(3)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Congenital structural myopathy Tubular aggregate myopathy
2 genes
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2 of 2 corroborated by 2+ sources
ORAI1(4), STIM1(4)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Keratitis Wagr syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ELP4(1), PAX6(6)
0.080 0.500 1.17e-5 5.72e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.