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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cervical intraepithelial neoplasia Head and neck cancer
2 genes
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HLA-DQB1(1), CLPTM1L(1)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. Cluster 1 →
Sebaceous gland disease Uveal melanoma
3 genes
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HERC2(1), IRF4(1), CLPTM1L(1)
0.058 0.214 5.80e-6 2.98e-5 ✓ sig. Cluster 162 →
Degenerative disorder Neurodegeneration with brain iron accumulation
3 genes
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3 of 3 corroborated by 2+ sources
FTL(3), PANK2(3), FTH1(5)
0.058 0.214 5.80e-6 2.98e-5 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Gastritis
2 genes
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1 of 2 corroborated by 2+ sources
0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Bouillaud’s disease Gastritis
2 genes
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1 of 2 corroborated by 2+ sources
0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Gastritis
2 genes
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1 of 2 corroborated by 2+ sources
0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid Gastritis
2 genes
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1 of 2 corroborated by 2+ sources
0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Mucopolysaccharidosis Pfaundler-hurler syndrome
2 genes
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1 of 2 corroborated by 2+ sources
IDUA(5), SLC26A1(1)
0.083 0.667 5.84e-6 2.99e-5 ✓ sig. —
Bouillaud’s disease Sinusitis
2 genes
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2 of 2 corroborated by 2+ sources
0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Sinusitis Skeletal system disease
2 genes
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0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Sinusitis Wheat allergic reaction
2 genes
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0.083 0.667 5.84e-6 2.99e-5 ✓ sig. Cluster 1 →
Carcinogenesis Pancreatic ductal carcinoma
3 genes
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NFE2L2(1), KRAS(1), CDKN2A(1)
0.064 0.167 5.91e-6 3.03e-5 ✓ sig. —
Limb girdle muscular dystrophy Sarcoglycanopathies
2 genes
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2 of 2 corroborated by 2+ sources
SGCA(5), SGCG(6)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. Cluster 14 →
Cholangiocarcinoma Hepatic veno occlusive disease with immunodeficiency
2 genes
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2 of 2 corroborated by 2+ sources
SP140(2), SP110(7)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. —
Colobomatous optic disc macular atrophy chorioretinopathy syndrome Microphthalmia
2 genes
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1 of 2 corroborated by 2+ sources
SIX6(6), C14orf39(1)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. Cluster 56 →
Microphthalmia Microphthalmia with retinitis pigmentosa and ocular anomalies
2 genes
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1 of 2 corroborated by 2+ sources
MFRP(4), C1QTNF5(1)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. Cluster 56 →
Cardiofacial dysplasia Cholangiocarcinoma
2 genes
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2 of 2 corroborated by 2+ sources
PRKACB(5), PRKACA(5)
0.051 1.000 5.93e-6 3.03e-5 ✓ sig. —
Brain stem neoplasms Breast neoplasms
2 genes
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CDK6(1), CDK4(1)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Anterior polar cataract Congenital total cataract
2 genes
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2 of 2 corroborated by 2+ sources
CRYAA(3), CRYGB(3)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 43 →
Autoimmune polyendocrine syndrome Lymphedema
2 genes
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2 of 2 corroborated by 2+ sources
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Thyroiditis
2 genes
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2 of 2 corroborated by 2+ sources
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Thyroiditis
2 genes
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2 of 2 corroborated by 2+ sources
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 1 →
Intestinal pseudo-obstruction Patent ductus arteriosus
2 genes
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1 of 2 corroborated by 2+ sources
TFAP2B(4), MYH11(1)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —
Carney-stratakis syndrome Pheochromocytoma
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(5), SDHD(5)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. Cluster 81 →
Pheochromocytoma Von hippel-lindau syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SDHB(2), VHL(7)
0.105 0.500 6.07e-6 3.10e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.