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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gliosarcoma Transitional cell carcinoma
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(2), TP53(2), TACC3(2)
0.064 0.188 4.93e-6 2.56e-5 ✓ sig. —
Coffin-siris syndrome Pituitary stalk interruption syndrome
3 genes
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3 of 3 corroborated by 2+ sources
ARID1B(7), SMARCA2(2), SOX11(4)
0.065 0.176 4.93e-6 2.56e-5 ✓ sig. —
Hepatic veno occlusive disease Mucositis
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), CSF3(2)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 196 →
Capillary malformation-arteriovenous malformation Hereditary hemorrhagic telangiectasia
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(6), CCNH(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 40 →
Capillary malformation-arteriovenous malformation Congenital venous anomaly
2 genes
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1 of 2 corroborated by 2+ sources
EPHB4(5), KRAS(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. —
Cryptogenic west syndrome Focal cortical dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(3), TSC1(3)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. —
Klippel-feil syndrome Spondylocostal dysostosis
2 genes
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1 of 2 corroborated by 2+ sources
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. —
Extravasation of diagnostic and therapeutic materials Occupational dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
KNG1(2), BDKRB2(2)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 250 →
Breast disease Congenital hand deformities
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), PTHLH(2)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 27 →
Prader-willi syndrome Skin hair eye pigmentation variation
2 genes
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2 of 2 corroborated by 2+ sources
HERC2(4), OCA2(3)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 298 →
Klippel-trenaunay syndrome Rubinstein-taybi syndrome
2 genes
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DLX5(1), SMOC1(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. —
Ruptured abdominal aortic aneurysm Varicose veins
2 genes
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ELN(1), MMP9(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Varicose veins
2 genes
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ELN(1), MMP9(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 66 →
Ruptured thoracic aortic aneurysm Varicose veins
2 genes
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ELN(1), MMP9(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 66 →
Thoracoabdominal aortic aneurysm Varicose veins
2 genes
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ELN(1), MMP9(1)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 66 →
Benign prostatic hyperplasia Cervical polyp
2 genes
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IRAK1BP1(1), MEI4(1)
0.056 1.000 5.02e-6 2.60e-5 ✓ sig. Cluster 37 →
Meningioma Nasopharyngeal carcinoma
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), PIK3CA(2), BAP1(2)
0.068 0.136 5.02e-6 2.60e-5 ✓ sig. —
Congenital clubfoot Skeletal dysplasia
3 genes
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COL5A1(1), TRPV4(1), INPP5E(1)
0.068 0.130 5.06e-6 2.62e-5 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Diffuse cutaneous systemic sclerosis
3 genes
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1 of 3 corroborated by 2+ sources
0.068 0.130 5.06e-6 2.62e-5 ✓ sig. —
Diabetic eye disease Obstructive sleep apnea syndrome
5 genes
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APOE(1), NRXN3(1), TCF7L2(1), THADA(1), FTO(1)
0.040 0.104 5.10e-6 2.64e-5 ✓ sig. —
Secondary malignant neoplasm Sickle cell anemia
3 genes
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2 of 3 corroborated by 2+ sources
HBE1(2), HBG2(2), OR51B5(1)
0.067 0.158 5.12e-6 2.65e-5 ✓ sig. Cluster 235 →
Mastocytosis Secondary malignant neoplasm
3 genes
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HBE1(1), HBG2(1), OR51B5(1)
0.067 0.158 5.12e-6 2.65e-5 ✓ sig. Cluster 235 →
Hypospadias Raynaud disease
3 genes
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2 of 3 corroborated by 2+ sources
GSTT1(2), GSTM1(2), ZFHX3(1)
0.057 0.231 5.30e-6 2.74e-5 ✓ sig. Cluster 21 →
Brain disease Occupational disease
3 genes
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3 of 3 corroborated by 2+ sources
MPO(2), ALB(2), TGFB1(2)
0.057 0.231 5.30e-6 2.74e-5 ✓ sig. —
Craniofacial microsomia Hemifacial microsomia
2 genes
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2 of 2 corroborated by 2+ sources
FOXI3(4), SF3B2(3)
0.111 0.500 5.31e-6 2.74e-5 ✓ sig. Cluster 48 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.