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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Carcinogenesis Nasopharyngeal carcinoma
3 genes
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KRAS(1), ERBB2(1), CDKN2A(1)
0.079 0.167 2.04e-6 1.13e-5 ✓ sig. Cluster 3 →
Gallbladder neoplasms Primary aldosteronism
3 genes
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1 of 3 corroborated by 2+ sources
B3GLCT(1), RXFP2(1), CCKAR(2)
0.077 0.188 2.09e-6 1.16e-5 ✓ sig. Cluster 143 →
Congenital anomalies of the kidney and urinary tract Congenital hypoplasia of kidney
3 genes
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PAX2(1), RET(1), KAT6B(1)
0.051 0.375 2.13e-6 1.18e-5 ✓ sig. —
Anterior segment dysgenesis Congenital cataract microcornea with corneal opacity
2 genes
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2 of 2 corroborated by 2+ sources
ATOH7(3), PXDN(5)
0.083 1.000 2.13e-6 1.18e-5 ✓ sig. —
Congenital clubfoot Congenital hypoplasia of femur
2 genes
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PLOD2(1), INPP5E(1)
0.083 1.000 2.13e-6 1.18e-5 ✓ sig. —
Combined osteogenesis imperfecta and ehlers-danlos syndrome Skeletal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL1A1(4), COL1A2(4)
0.083 1.000 2.13e-6 1.18e-5 ✓ sig. —
Coronary restenosis Heart valve prolapse
3 genes
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1 of 3 corroborated by 2+ sources
ACE(2), SPP1(1), ITGB2(1)
0.073 0.214 2.16e-6 1.19e-5 ✓ sig. —
Eating disorder Vascular dementia
7 genes
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1 of 7 corroborated by 2+ sources
CRBN(1), MACROD2(1), MGMT(1), NALF1(1), TMEM106B(2), SORCS2(1), KCNK5(1)
0.036 0.097 2.19e-6 1.21e-5 ✓ sig. Cluster 69 →
Endometrial hyperplasia Penile neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), KRAS(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Cecal neoplasms Endometrial hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
CTNNB1(2), KRAS(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Goldenhar syndrome Hemifacial microsomia
2 genes
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1 of 2 corroborated by 2+ sources
FOXI3(1), SF3B2(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 48 →
Esotropia Extrinsic allergic alveolitis
2 genes
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1 of 2 corroborated by 2+ sources
SOD2(2), TNF(1)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Congenital malformation syndromes predominantly affecting facial appearance Martsolf syndrome
2 genes
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2 of 2 corroborated by 2+ sources
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 48 →
Martsolf syndrome Warburg micro syndrome
2 genes
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2 of 2 corroborated by 2+ sources
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 48 →
Myelomonocytic leukemia Neurofibromatosis-noonan syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NF1(6), PTPN11(4)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Intestinal pseudo-obstruction Tricuspid valve disease
2 genes
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MYH11(1), NDE1(1)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 220 →
Kidney and ureter calculus Ureterolithiasis
2 genes
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2 of 2 corroborated by 2+ sources
RGS14(2), CYP24A1(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Skin abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), IRF6(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Iron deficiency anemia Microcytic anemia
2 genes
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2 of 2 corroborated by 2+ sources
SLC11A2(6), TMPRSS6(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 227 →
Alport syndrome, x-linked Leiomyoma
2 genes
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2 of 2 corroborated by 2+ sources
COL4A5(4), COL4A6(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 49 →
Cleft lip and cleft of alveolar process of maxilla Congenital skin anomaly
2 genes
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TP63(1), IRF6(1)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Craniodiaphyseal dysplasia Mainzer-saldino disease
2 genes
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2 of 2 corroborated by 2+ sources
IFT140(2), WDR19(6)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Anti-glomerular basement membrane disease Berylliosis
2 genes
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2 of 2 corroborated by 2+ sources
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Perisylvian syndrome Tubulinopathy
2 genes
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2 of 2 corroborated by 2+ sources
TUBB2B(3), TUBA1A(3)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Atherosclerosis Dyslexia
8 genes
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8 of 8 corroborated by 2+ sources
APOB(3), APOE(3), BCL3(2), HDAC9(3), HP(2), ABCG5(2), AHR(2), CETP(2)
0.036 0.072 2.28e-6 1.26e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.