Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
← Back to all clusters
Cluster 32
17
Diseases
404
Unique genes
0.069
Avg. similarity score
Spermatogenic failure
Most-connected disease (10 links)
Disease
Searched: ciliary dyskinesia, primary, 45
Pinned (dragged)
Node size = connections within this cluster · edge thickness = similarity strength · hover an edge for its details ·
click a node to select it and show its pairs below (double-click or Ctrl/⌘-click opens the disease page) ·
drag a node to pin it in place · scroll/pinch to zoom.
ciliary dyskinesia, primary, 45
Spermatogenic failure
Congenital impairment of spermatozoa motility
Male infertility single gene azoospermia
Teratozoospermia
Azoospermia
Premature ovarian failure
Testicular azoospermia
Male infertility
SYCE1-related gametogenic failure
Spermatogenic failure, x-linked
spermatogenic failure 38
Male infertility teratozoospermia
Synovial sarcoma
Congenital alpha-fetoprotein deficiency
Ruijs-aalfs syndrome
X-linked intellectual disability, Cabezas type
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Spermatogenic failure | 10 | 10 | 114 |
| Congenital impairment of spermatozoa motility | 6 | 6 | 23 |
| Male infertility single gene azoospermia | 6 | 6 | 107 |
| Teratozoospermia | 6 | 6 | 27 |
| Azoospermia | 5 | 5 | 32 |
| Premature ovarian failure | 5 | 5 | 114 |
| Testicular azoospermia | 5 | 5 | 33 |
| Male infertility | 4 | 4 | 111 |
| SYCE1-related gametogenic failure | 3 | 3 | 1 |
| Spermatogenic failure, x-linked | 3 | 3 | 8 |
| spermatogenic failure 38 | 3 | 3 | 1 |
| Male infertility teratozoospermia | 2 | 2 | 2 |
| Synovial sarcoma | 2 | 2 | 3 |
| Congenital alpha-fetoprotein deficiency | 1 | 1 | 1 |
| Ruijs-aalfs syndrome | 1 | 1 | 1 |
| X-linked intellectual disability, Cabezas type | 1 | 1 | 1 |
| ciliary dyskinesia, primary, 45 | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| C14ORF39 | 5 / 17 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure and 1 more |
| MOV10L1 | 5 / 17 | Azoospermia, Male infertility, Male infertility single gene azoospermia, Spermatogenic failure and 1 more |
| MSH5 | 5 / 17 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure and 1 more |
| NR5A1 | 5 / 17 | Male infertility, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure and 1 more |
| ARMC2 | 4 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure, spermatogenic failure 38, Teratozoospermia |
| DMRT1 | 4 / 17 | Male infertility, Male infertility single gene azoospermia, spermatogenic failure, Testicular azoospermia |
| DNAH10 | 4 / 17 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Teratozoospermia |
| FANCM | 4 / 17 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| GCNA | 4 / 17 | Azoospermia, Male infertility single gene azoospermia, Spermatogenic failure, x-linked, Testicular azoospermia |
| M1AP | 4 / 17 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| MEIOB | 4 / 17 | Azoospermia, Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| PNLDC1 | 4 / 17 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| SHOC1 | 4 / 17 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| STAG3 | 4 / 17 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure, Testicular azoospermia |
| SYCE1 | 4 / 17 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure, SYCE1-related gametogenic failure |
| SYCP3 | 4 / 17 | Azoospermia, Male infertility, Male infertility single gene azoospermia, Spermatogenic failure |
| TDRD9 | 4 / 17 | Azoospermia, Male infertility, Male infertility single gene azoospermia, Spermatogenic failure |
| TERB1 | 4 / 17 | Azoospermia, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TEX11 | 4 / 17 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, x-linked, Testicular azoospermia |
| USP26 | 4 / 17 | Congenital impairment of spermatozoa motility, Male infertility, Spermatogenic failure, x-linked, Teratozoospermia |
| ZMYND15 | 4 / 17 | Male infertility, Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| BRDT | 3 / 17 | Azoospermia, Premature ovarian failure, Spermatogenic failure |
| CATSPER1 | 3 / 17 | Congenital impairment of spermatozoa motility, Male infertility, Spermatogenic failure |
| CFAP251 | 3 / 17 | Congenital impairment of spermatozoa motility, Male infertility teratozoospermia, Spermatogenic failure |
| CFAP43 | 3 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure, Teratozoospermia |
| CFTR | 3 / 17 | Azoospermia, Male infertility, Male infertility single gene azoospermia |
| DMC1 | 3 / 17 | Azoospermia, Spermatogenic failure, Testicular azoospermia |
| DNAH1 | 3 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure, Teratozoospermia |
| DNAH6 | 3 / 17 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| FAHD1 | 3 / 17 | Azoospermia, Premature ovarian failure, Spermatogenic failure |
| KASH5 | 3 / 17 | Azoospermia, Premature ovarian failure, Spermatogenic failure |
| KLHL10 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| MCM9 | 3 / 17 | Male infertility, Premature ovarian failure, Testicular azoospermia |
| MSH4 | 3 / 17 | Premature ovarian failure, Spermatogenic failure, Testicular azoospermia |
| NOS3 | 3 / 17 | Male infertility, Premature ovarian failure, Teratozoospermia |
| PDHA2 | 3 / 17 | Azoospermia, Male infertility single gene azoospermia, Spermatogenic failure |
| REC8 | 3 / 17 | Azoospermia, Premature ovarian failure, Testicular azoospermia |
| RNF212 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| SPAG17 | 3 / 17 | Congenital impairment of spermatozoa motility, Male infertility single gene azoospermia, Spermatogenic failure |
| SSX1 | 3 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure, x-linked, Synovial sarcoma |
| SYCP2 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TERB2 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TEX14 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TEX15 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| TTC21A | 3 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure, Teratozoospermia |
| XRCC2 | 3 / 17 | Male infertility single gene azoospermia, Premature ovarian failure, Spermatogenic failure |
| ZSWIM7 | 3 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, Testicular azoospermia |
| ACTL7A | 2 / 17 | Male infertility, Spermatogenic failure |
| ACTL9 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| ADCY10 | 2 / 17 | Male infertility, Teratozoospermia |
| AFP | 2 / 17 | Congenital alpha-fetoprotein deficiency, Premature ovarian failure |
| AK7 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| AKAP4 | 2 / 17 | Congenital impairment of spermatozoa motility, Teratozoospermia |
| AURKC | 2 / 17 | Male infertility, Spermatogenic failure |
| AXDND1 | 2 / 17 | Male infertility, Testicular azoospermia |
| BCL2 | 2 / 17 | Azoospermia, Male infertility |
| BNC1 | 2 / 17 | Male infertility single gene azoospermia, Premature ovarian failure |
| BRWD1 | 2 / 17 | Male infertility, Premature ovarian failure |
| CATIP | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| CATSPER2 | 2 / 17 | Male infertility, Spermatogenic failure |
| CCDC146 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| CCDC34 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| CFAP44 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP65 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP69 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP70 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| CFAP91 | 2 / 17 | Male infertility teratozoospermia, Spermatogenic failure |
| CT55 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure, x-linked |
| CUL4B | 2 / 17 | Teratozoospermia, X-linked intellectual disability, Cabezas type |
| CYP17A1 | 2 / 17 | Male infertility, Premature ovarian failure |
| DCAF6 | 2 / 17 | Male infertility, Teratozoospermia |
| DDX25 | 2 / 17 | Azoospermia, Male infertility single gene azoospermia |
| DNAH17 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| DNAH3 | 2 / 17 | Male infertility, Spermatogenic failure |
| DNHD1 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| DRC1 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| FBXO43 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| FKBP6 | 2 / 17 | Male infertility, Spermatogenic failure |
| FSIP2 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| HENMT1 | 2 / 17 | Azoospermia, Male infertility |
| HFM1 | 2 / 17 | Azoospermia, Premature ovarian failure |
| HORMAD1 | 2 / 17 | Male infertility, Male infertility single gene azoospermia |
| MCM8 | 2 / 17 | Azoospermia, Premature ovarian failure |
| MCMDC2 | 2 / 17 | Azoospermia, Male infertility single gene azoospermia |
| NANOS1 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| NCKAP5 | 2 / 17 | Male infertility, Premature ovarian failure |
| PIWIL2 | 2 / 17 | Male infertility, Male infertility single gene azoospermia |
| PMFBP1 | 2 / 17 | Spermatogenic failure, Teratozoospermia |
| POLG | 2 / 17 | Male infertility, Premature ovarian failure |
| RPL10L | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| SEPTIN12 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| SEPTIN4 | 2 / 17 | Male infertility, Spermatogenic failure |
| SLC26A8 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| SOHLH1 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| SPATA16 | 2 / 17 | Spermatogenic failure, Teratozoospermia |
| SPATA22 | 2 / 17 | Premature ovarian failure, Spermatogenic failure |
| SPEF2 | 2 / 17 | Congenital impairment of spermatozoa motility, Spermatogenic failure |
| SPINK2 | 2 / 17 | Male infertility single gene azoospermia, Spermatogenic failure |
| SPRTN | 2 / 17 | Ruijs-aalfs syndrome, Teratozoospermia |
| STX2 | 2 / 17 | Male infertility, Spermatogenic failure |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Ovarian steroidogenesis | KEGG | 9 / 52 | 5.1× | 5.14e-5 | 1.27e-3 ✓ sig. |
| Prolactin signaling pathway | KEGG | 10 / 71 | 4.2× | 1.22e-4 | 2.57e-3 ✓ sig. |
| Sperm Motility And Taxes | Reactome | 4 / 9 | 13.2× | 1.39e-4 | 2.84e-3 ✓ sig. |
| Hormone ligand-binding receptors | Reactome | 4 / 12 | 9.9× | 5.04e-4 | 7.91e-3 ✓ sig. |
| Chronic myeloid leukemia | KEGG | 9 / 77 | 3.5× | 1.08e-3 | 1.42e-2 ✓ sig. |
| Defective MTRR causes methylmalonic aciduria and homocystinuria type cblE | Reactome | 2 / 2 | 29.7× | 1.13e-3 | 1.47e-2 ✓ sig. |
| Defective MTR causes methylmalonic aciduria and homocystinuria type cblG | Reactome | 2 / 2 | 29.7× | 1.13e-3 | 1.47e-2 ✓ sig. |
| SUMOylation of intracellular receptors | Reactome | 5 / 27 | 5.5× | 1.84e-3 | 2.15e-2 ✓ sig. |
| Motor proteins | KEGG | 15 / 194 | 2.3× | 2.33e-3 | 2.55e-2 ✓ sig. |
| GLI proteins bind promoters of Hh responsive genes to promote transcription | Reactome | 2 / 3 | 19.8× | 3.31e-3 | 3.29e-2 ✓ sig. |
| MAPK3 (ERK1) activation | Reactome | 3 / 10 | 8.9× | 3.80e-3 | 3.62e-2 ✓ sig. |
| Huntington disease | KEGG | 20 / 308 | 1.9× | 3.83e-3 | 3.64e-2 ✓ sig. |
| Autophagy - other | KEGG | 5 / 32 | 4.6× | 4.00e-3 | 3.75e-2 ✓ sig. |
| Stabilization of p53 | Reactome | 3 / 11 | 8.1× | 5.10e-3 | 4.43e-2 ✓ sig. |
| Interleukin-6 signaling | Reactome | 3 / 11 | 8.1× | 5.10e-3 | 4.43e-2 ✓ sig. |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| spermatogenesis | GO:0007283 | 102 / 556 | 8.5× | 4.88e-66 | 3.44e-61 ✓ sig. |
| meiotic cell cycle | GO:0051321 | 45 / 137 | 15.2× | 5.64e-41 | 6.42e-37 ✓ sig. |
| cell differentiation | GO:0030154 | 88 / 1,051 | 3.9× | 7.01e-29 | 3.48e-25 ✓ sig. |
| piRNA processing | GO:0034587 | 17 / 21 | 37.4× | 1.95e-25 | 7.01e-22 ✓ sig. |
| flagellated sperm motility | GO:0030317 | 32 / 142 | 10.4× | 1.13e-23 | 3.19e-20 ✓ sig. |
| spermatid development | GO:0007286 | 28 / 120 | 10.8× | 2.68e-21 | 5.20e-18 ✓ sig. |
| male meiotic nuclear division | GO:0007140 | 15 / 31 | 22.4× | 1.79e-17 | 1.90e-14 ✓ sig. |
| fertilization | GO:0009566 | 18 / 54 | 15.4× | 3.48e-17 | 3.51e-14 ✓ sig. |
| homologous chromosome pairing at meiosis | GO:0007129 | 15 / 33 | 21.0× | 5.92e-17 | 5.85e-14 ✓ sig. |
| regulatory ncRNA-mediated gene silencing | GO:0031047 | 19 / 65 | 13.5× | 7.49e-17 | 7.28e-14 ✓ sig. |
| oogenesis | GO:0048477 | 17 / 53 | 14.8× | 5.59e-16 | 4.64e-13 ✓ sig. |
| cilium movement | GO:0003341 | 16 / 48 | 15.4× | 2.03e-15 | 1.50e-12 ✓ sig. |
| sperm axoneme assembly | GO:0007288 | 13 / 31 | 19.4× | 2.70e-14 | 1.63e-11 ✓ sig. |
| synaptonemal complex assembly | GO:0007130 | 12 / 25 | 22.2× | 3.58e-14 | 2.14e-11 ✓ sig. |
| reciprocal meiotic recombination | GO:0007131 | 13 / 33 | 18.2× | 7.21e-14 | 4.09e-11 ✓ sig. |