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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cutaneous mastocytosis Secondary malignant neoplasm
3 genes
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HBE1(1), HBG2(1), OR51B5(1)
0.088 0.176 1.07e-6 6.26e-6 ✓ sig. Cluster 235 →
Larsen syndrome Marshall syndrome
3 genes
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1 of 3 corroborated by 2+ sources
XYLT2(1), PLOD3(1), GZF1(3)
0.088 0.176 1.07e-6 6.26e-6 ✓ sig. —
Intestinal disaccharide malabsorption Prediabetes
2 genes
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HK1(1), GCK(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Developmental venous anomaly Hereditary hemorrhagic telangiectasia
2 genes
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RASA1(1), CCNH(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Arima syndrome Encephalocele
2 genes
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CC2D2A(1), CEP290(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Arteriovenous hemangioma Hereditary hemorrhagic telangiectasia
2 genes
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1 of 2 corroborated by 2+ sources
ENG(7), RASA1(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Arteriovenous hemangioma Congenital venous anomaly
2 genes
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GLMN(1), TEK(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 261 →
Bestrophinopathy Iron overload
2 genes
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2 of 2 corroborated by 2+ sources
BEST1(7), FTH1(2)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
Autoimmune polyendocrine syndrome Central nervous system non-hodgkin lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 1 →
Bonnevie-ullrich syndrome Ureteral calculi
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), SOD1(2)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 285 →
Breast disease Congenital foot deformity
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), PTHLH(2)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 27 →
Autoimmune polyendocrine syndrome Vogt-koyanagi-harada disease
2 genes
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2 of 2 corroborated by 2+ sources
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 1 →
Central nervous system non-hodgkin lymphoma Waldenstrom macroglobulinemia
2 genes
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EXOC2(1), IRF4(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 1 →
Cortical dysplasia Focal cortical dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
TBR1(1), TSC1(3)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —
46,xy disorder of sex developmen Male pseudohypopituitarism
2 genes
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2 of 2 corroborated by 2+ sources
AKR1C2(3), AKR1C4(3)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 344 →
Fanconi anemia Pituitary stalk interruption syndrome
4 genes
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4 of 4 corroborated by 2+ sources
FANCD2(7), FANCA(7), FANCG(6), SLX4(8)
0.060 0.129 1.05e-6 6.17e-6 ✓ sig. —
Nasal polyp Selective iga deficiency disease
4 genes
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FOXP1(1), HLA-DQA1(1), CLEC16A(1), GATA3(1)
0.060 0.129 1.05e-6 6.17e-6 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Granulomatosis with polyangiitis
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DPB1(3), HLA-DPA1(3), PRTN3(4)
0.086 0.214 1.05e-6 6.15e-6 ✓ sig. —
Cachexia Hepatolenticular degeneration
3 genes
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2 of 3 corroborated by 2+ sources
TNF(2), IL6(2), CXCL8(1)
0.081 0.250 1.05e-6 6.15e-6 ✓ sig. Cluster 76 →
Aortic stenosis Neoplasms
5 genes
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ARHGAP24(1), FADS1(1), FADS2(1), MYRF(1), TMEM258(1)
0.049 0.106 1.03e-6 6.02e-6 ✓ sig. —
ehlers-danlos syndrome, classic type Loeys-dietz syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COL5A1(2), COL5A2(2)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Encephalopathy due to mitochondrial and peroxisomal fission defect Mitochondrial encephalomyopathy
2 genes
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2 of 2 corroborated by 2+ sources
DNM1L(4), MFF(2)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Hemophilia a Hemophilia b
2 genes
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1 of 2 corroborated by 2+ sources
F2(1), F9(7)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Combined osteogenesis imperfecta and ehlers-danlos syndrome Dentinogenesis imperfecta
2 genes
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2 of 2 corroborated by 2+ sources
COL1A1(4), COL1A2(4)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Congenital malformation syndromes predominantly involving limbs Vacterl association
2 genes
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DLX5(1), SMOC1(1)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. Cluster 249 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.