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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Activated pi3k-delta syndrome Agammaglobulinemia
2 genes
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2 of 2 corroborated by 2+ sources
PIK3CD(2), PIK3R1(5)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 181 →
Dominantly inherited sensory neuropathy Sensory neuropathy
2 genes
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DNMT1(1), SCN11A(1)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. —
Hematoma Intracranial hemorrhage
2 genes
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PLAT(1), F7(1)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. —
Lipoprotein lipase deficiency Neoplasms
4 genes
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FADS1(1), FADS2(1), MYRF(1), TMEM258(1)
0.054 0.133 1.97e-6 1.10e-5 ✓ sig. —
Larsen syndrome Skeletal dysplasia
3 genes
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2 of 3 corroborated by 2+ sources
FGFR3(1), CSGALNACT1(5), CHST3(4)
0.079 0.176 1.95e-6 1.09e-5 ✓ sig. Cluster 68 →
Congenital clubfoot Micrognathism
3 genes
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BLTP1(1), PITX1(1), INPP5E(1)
0.079 0.176 1.95e-6 1.09e-5 ✓ sig. —
Congenital factor xiii deficiency Venous thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
F13A1(3), F13B(2)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
congenital heart disease with heterotaxy syndrome Heterotaxy syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ZIC3(6), NODAL(5)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. Cluster 46 →
Factor xiii deficiency Venous thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
F13A1(6), F13B(6)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Gm1 gangliosidosis Mucopolysaccharidosis
2 genes
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1 of 2 corroborated by 2+ sources
GLB1(7), TMPPE(1)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Cyclic neutropenia Severe congenital neutropenia
2 genes
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1 of 2 corroborated by 2+ sources
CFD(1), ELANE(6)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Centronuclear myopathy X-linked centronuclear myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MTM1(2), DNM2(4)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Centronuclear myopathy Malignant hyperthermia
2 genes
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2 of 2 corroborated by 2+ sources
RYR1(6), CACNA1S(5)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Syndactyly Triphalangeal thumb-polysyndactyly syndrome
2 genes
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2 of 2 corroborated by 2+ sources
LMBR1(4), SHH(3)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Cenani-lenz syndrome Syndactyly
2 genes
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2 of 2 corroborated by 2+ sources
APC(3), LRP4(6)
0.087 1.000 1.95e-6 1.09e-5 ✓ sig. —
Testicular carcinoma Testicular neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
DMRT1(2), ATF7IP(2), KITLG(2)
0.046 0.429 1.95e-6 1.09e-5 ✓ sig. —
Testicular germ cell tumor Testicular neoplasms
3 genes
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3 of 3 corroborated by 2+ sources
DMRT1(2), ATF7IP(2), KITLG(2)
0.046 0.429 1.95e-6 1.09e-5 ✓ sig. —
Bradycardia Tremor
3 genes
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HTR1A(1), TRH(1), CYP2D6(1)
0.077 0.200 1.92e-6 1.07e-5 ✓ sig. Cluster 13 →
Cystic kidney disease Urinary system disease
3 genes
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BCAS3(1), MAF(1), INVS(1)
0.077 0.200 1.92e-6 1.07e-5 ✓ sig. —
Cervical intraepithelial neoplasia Cold paroxysmal hemoglobinuria
2 genes
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2 of 2 corroborated by 2+ sources
0.182 0.333 1.90e-6 1.06e-5 ✓ sig. Cluster 1 →
Adenomatous polyposis Tuberous sclerosis complex
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(7), NTHL1(4)
0.182 0.333 1.90e-6 1.06e-5 ✓ sig. —
Bare lymphocyte syndrome Severe combined immunodeficiency
3 genes
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RFX5(1), RFXANK(1), TAPBP(1)
0.053 0.375 1.89e-6 1.06e-5 ✓ sig. —
Brain ischemia Idiopathic pulmonary fibrosis
6 genes
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5 of 6 corroborated by 2+ sources
PLAU(2), STAT3(2), TNF(2), PTGS2(2), HIF1A(2), CCL13(1)
0.041 0.086 1.89e-6 1.06e-5 ✓ sig. —
Kawasaki disease Polymyositis
4 genes
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2 of 4 corroborated by 2+ sources
TNF(2), HLA-DQB1(1), BLK(3), FAM167A(1)
0.048 0.182 1.88e-6 1.05e-5 ✓ sig. Cluster 25 →
Hyperaldosteronism Primary aldosteronism
3 genes
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1 of 3 corroborated by 2+ sources
CACNA1D(3), B3GLCT(1), RXFP2(1)
0.079 0.188 1.84e-6 1.03e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.