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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Brain infarction Proteinuria
4 genes
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4 of 4 corroborated by 2+ sources
APOE(2), HLA-DQA1(2), CYBB(2), ALOX5AP(2)
0.053 0.111 2.64e-6 1.44e-5 ✓ sig. —
Epidermal nevus Urinary bladder cancer
3 genes
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3 of 3 corroborated by 2+ sources
FGFR3(4), KRAS(2), HRAS(3)
0.042 0.429 2.60e-6 1.42e-5 ✓ sig. —
Bone fracture Dupuytren contracture
6 genes
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FMN2(1), RAB31(1), CHSY1(1), SFRP4(1), STARD3NL(1), PRKAR1B(1)
0.039 0.088 2.58e-6 1.41e-5 ✓ sig. Cluster 299 →
Cortical dysplasia with other brain malformations Polymicrogyria
3 genes
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3 of 3 corroborated by 2+ sources
DYNC1H1(3), ADGRG1(4), TUBB2B(4)
0.075 0.176 2.53e-6 1.38e-5 ✓ sig. —
Cowchock syndrome Spondyloepimetaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(4), RAB33A(1)
0.077 1.000 2.53e-6 1.38e-5 ✓ sig. —
Anophthalmia/microphthalmia-esophageal atresia syndrome Colobomatous optic disc macular atrophy chorioretinopathy syndrome
2 genes
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1 of 2 corroborated by 2+ sources
SIX6(4), C14orf39(1)
0.077 1.000 2.53e-6 1.38e-5 ✓ sig. Cluster 56 →
Gallbladder neoplasms Soft tissue neoplasms
2 genes
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1 of 2 corroborated by 2+ sources
ERBB4(2), EPHB1(1)
0.077 1.000 2.53e-6 1.38e-5 ✓ sig. —
Sarcoma Senile cataract
3 genes
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3 of 3 corroborated by 2+ sources
ERCC2(2), GSTP1(2), ATM(2)
0.068 0.231 2.53e-6 1.38e-5 ✓ sig. —
Bone neoplasms Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
PTGS2(2), MMP9(2), MMP2(2)
0.077 0.150 2.46e-6 1.34e-5 ✓ sig. —
Seborrheic dermatitis Uveal melanoma
4 genes
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HERC2(1), IRF4(1), SGPL1(1), UNC5B(1)
0.054 0.108 2.42e-6 1.33e-5 ✓ sig. Cluster 162 →
Blepharoptosis Centronuclear myopathy
3 genes
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1 of 3 corroborated by 2+ sources
RYR1(3), CHRND(1), OPA1(1)
0.077 0.158 2.42e-6 1.32e-5 ✓ sig. —
Iron metabolism disorder Polycythemia
3 genes
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2 of 3 corroborated by 2+ sources
HFE(2), JAK2(3), TMPRSS6(1)
0.077 0.158 2.42e-6 1.32e-5 ✓ sig. —
Dyskinesia Movement disorder
4 genes
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4 of 4 corroborated by 2+ sources
PDYN(2), DRD2(2), OPRM1(2), GNAO1(3)
0.050 0.154 2.37e-6 1.30e-5 ✓ sig. —
Aicardi goutieres syndrome Chilblain lupus erythematosus
2 genes
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2 of 2 corroborated by 2+ sources
SAMHD1(5), TREX1(6)
0.167 0.400 2.36e-6 1.29e-5 ✓ sig. Cluster 150 →
Aortic rupture Ruptured abdominal aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), MMP9(2)
0.167 0.400 2.36e-6 1.29e-5 ✓ sig. Cluster 66 →
Aortic rupture Ruptured aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), MMP9(2)
0.167 0.400 2.36e-6 1.29e-5 ✓ sig. Cluster 66 →
Aortic rupture Ruptured thoracic aortic aneurysm
2 genes
Show details
2 of 2 corroborated by 2+ sources
FBN1(2), MMP9(2)
0.167 0.400 2.36e-6 1.29e-5 ✓ sig. Cluster 66 →
Benign prostatic hyperplasia Lipoma
3 genes
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TERT(1), BET1L(1), STN1(1)
0.067 0.250 2.33e-6 1.28e-5 ✓ sig. Cluster 37 →
Deficiency anemia Transcobalamin deficiency
2 genes
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2 of 2 corroborated by 2+ sources
TCN2(7), TCN1(2)
0.080 1.000 2.33e-6 1.28e-5 ✓ sig. Cluster 106 →
Deafness enamel hypoplasia nail defects Peroxisome biogenesis disorder
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(7), PEX1(6)
0.080 1.000 2.33e-6 1.28e-5 ✓ sig. —
Deafness-enamel hypoplasia-nail defects syndrome Peroxisome biogenesis disorder
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(8), PEX1(7)
0.080 1.000 2.33e-6 1.28e-5 ✓ sig. —
Andersen-tawil syndrome Hereditary atrial fibrillation
2 genes
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2 of 2 corroborated by 2+ sources
KCNJ2(5), KCNJ5(2)
0.080 1.000 2.33e-6 1.28e-5 ✓ sig. —
Glucocorticoid-remediable aldosteronism Hyperaldosteronism
2 genes
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2 of 2 corroborated by 2+ sources
CYP11B2(3), CYP11B1(6)
0.080 1.000 2.33e-6 1.28e-5 ✓ sig. —
Dermatitis herpetiformis Hepatic encephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
TNF(2), LTA(2)
0.125 0.667 2.30e-6 1.26e-5 ✓ sig. —
Cleft palate and bilateral cleft lip Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome
2 genes
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1 of 2 corroborated by 2+ sources
0.125 0.667 2.30e-6 1.26e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.