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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Immunodeficiency-centromeric instability-facial anomalies syndrome Kabuki syndrome
2 genes
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2 of 2 corroborated by 2+ sources
DNMT3B(2), ZBTB24(2)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 335 →
Bouillaud’s disease Thyroiditis
2 genes
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2 of 2 corroborated by 2+ sources
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Skeletal system disease Thyroiditis
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Thyroiditis Wheat allergic reaction
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Bruxism Rett syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CDKL5(4), MECP2(7)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 61 →
Arachnoid cysts Rett syndrome
2 genes
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GPHN(1), PALS1(1)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. —
Bouillaud’s disease Lymphedema
2 genes
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2 of 2 corroborated by 2+ sources
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Lymphedema Skeletal system disease
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Lymphedema Wheat allergic reaction
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Cerebral thrombosis Hemophilia a
2 genes
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PLAT(1), VWF(1)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. —
Hydrops fetalis Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 40 →
Ataxia with oculomotor apraxia Spinocerebellar ataxia
3 genes
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3 of 3 corroborated by 2+ sources
SETX(6), APTX(5), PIK3R5(6)
0.028 0.600 2.96e-6 1.60e-5 ✓ sig. —
Methylmalonic acidemia methylmalonic aciduria and homocystinuria
2 genes
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2 of 2 corroborated by 2+ sources
ZNF143(2), THAP11(5)
0.071 1.000 2.96e-6 1.60e-5 ✓ sig. Cluster 246 →
Eating disorder Willis-ekbom disease
8 genes
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ASB3(1), CRBN(1), MGMT(1), ROBO2(1), SEMA6D(1), SUMF1(1), CADM1(1), LRMDA(1)
0.031 0.111 2.94e-6 1.59e-5 ✓ sig. —
Congenital epicanthus Esophageal atresia
3 genes
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ATP1A3(1), TCF4(1), KCNA6(1)
0.068 0.214 2.92e-6 1.58e-5 ✓ sig. Cluster 238 →
Generalized epilepsy Myoclonic epilepsy
4 genes
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3 of 4 corroborated by 2+ sources
GABRA2(1), JRK(3), SCN1A(3), CACNB4(3)
0.047 0.167 2.88e-6 1.56e-5 ✓ sig. —
Retinopathy of prematurity Syndactyly
3 genes
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2 of 3 corroborated by 2+ sources
GLI3(2), IHH(1), FZD4(3)
0.075 0.150 2.84e-6 1.54e-5 ✓ sig. —
Leopard syndrome Neurofibromatosis-noonan syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PTPN11(5), MAP2K2(2)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. —
Macrothrombocytopenia Thrombasthenia
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(3), ITGA2B(3)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 33 →
Melanocytic nevus Penile neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), HRAS(2)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 18 →
Cardiovascular abnormalities Paroxysmal atrial fibrillation
2 genes
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KCNQ1(1), MYBPC3(1)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. —
Anhydramnios Caroli disease
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), PKHD1(3)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 157 →
Anterior polar cataract Lamellar cataract
2 genes
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2 of 2 corroborated by 2+ sources
CRYAA(2), CRYGB(2)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 43 →
Autoimmune polyendocrine syndrome Gastroparesis
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 1 →
Esophageal achalasia Gastroparesis
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.