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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Body weight Diabetic polyneuropathy
2 genes
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2 of 2 corroborated by 2+ sources
CDKAL1(2), FTO(2)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. Cluster 73 →
Body weight Synovitis
2 genes
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2 of 2 corroborated by 2+ sources
POMC(2), FTO(2)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Congenital anomaly of limb Urogenital abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
TGFB2(2), HOXA11(2)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Cowden disease Vacterl association
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(6), KLLN(6)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Hepatic insufficiency Pulmonary edema
2 genes
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NOS3(1), MAPK14(1)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Male infertility large polyploid spermatozoa Male infertility spermatogenesis disorder
2 genes
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2 of 2 corroborated by 2+ sources
DNHD1(2), AURKC(3)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Charge syndrome Male infertility spermatogenesis disorder
2 genes
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1 of 2 corroborated by 2+ sources
KMT2D(1), CHD7(7)
0.083 0.222 3.63e-5 1.66e-4 ✓ sig. —
Bile acid malabsorption Cognition disorder
2 genes
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2 of 2 corroborated by 2+ sources
SLC10A2(5), SLC51B(4)
0.036 0.667 3.61e-5 1.66e-4 ✓ sig. Cluster 351 →
Digestive system disease Intestinal vascular insufficiency
2 genes
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C2orf80(1), NEDD9(1)
0.021 1.000 3.61e-5 1.66e-4 ✓ sig. —
Cushing's disease Giant cell glioblastoma
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), PPARG(2)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. —
Erythrocytosis Hereditary hemolytic anemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(6), BPGM(3)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. Cluster 105 →
Macrothrombocytopenia Platelet disorder
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(2), TPM4(2)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. Cluster 33 →
Essential thrombocythemia Stomatitis
2 genes
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1 of 2 corroborated by 2+ sources
IFNA2(1), VWF(2)
0.087 0.182 3.60e-5 1.66e-4 ✓ sig. —
Dyslipidemias Osteosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
TNFRSF11A(3), TCIRG1(4)
0.080 0.250 3.60e-5 1.66e-4 ✓ sig. —
Ruptured abdominal aortic aneurysm Thoracic aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), EFEMP2(2)
0.080 0.250 3.60e-5 1.66e-4 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Thoracic aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), EFEMP2(2)
0.080 0.250 3.60e-5 1.66e-4 ✓ sig. Cluster 66 →
Ruptured thoracic aortic aneurysm Thoracic aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), EFEMP2(2)
0.080 0.250 3.60e-5 1.66e-4 ✓ sig. Cluster 66 →
Thoracic aortic aneurysm Thoracoabdominal aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(2), EFEMP2(2)
0.080 0.250 3.60e-5 1.66e-4 ✓ sig. Cluster 66 →
Congenital heart septal defect Double outlet right ventricle
2 genes
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2 of 2 corroborated by 2+ sources
NKX2-5(2), YES1(2)
0.080 0.250 3.60e-5 1.66e-4 ✓ sig. —
Benign infantile epilepsy Myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
CHRNA2(2), KCNQ3(3)
0.069 0.333 3.48e-5 1.60e-4 ✓ sig. —
Congenital epicanthus Esotropia
2 genes
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ANKRD11(1), TFAP2A(1)
0.087 0.200 3.44e-5 1.58e-4 ✓ sig. —
Brain edema Hepatic encephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
S100B(2), TNF(2)
0.087 0.200 3.44e-5 1.58e-4 ✓ sig. —
Childhood absence epilepsy Hepatic encephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
GABRG2(3), GABRA1(3)
0.087 0.200 3.44e-5 1.58e-4 ✓ sig. —
Bronchial hyperreactivity Common migraine
2 genes
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2 of 2 corroborated by 2+ sources
TAC1(2), CALCA(2)
0.087 0.200 3.44e-5 1.58e-4 ✓ sig. —
Brain aneurysm Peripheral vascular disease
4 genes
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CARD11(1), HDAC9(1), LINGO2(1), EDNRA(1)
0.034 0.121 3.43e-5 1.58e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.