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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Gaucher disease Vascular system injury
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), TNF(2)
0.077 0.200 5.14e-5 2.32e-4 ✓ sig. —
Vascular remodeling Vasculitis
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), SENP1(2)
0.059 0.333 5.11e-5 2.31e-4 ✓ sig. Cluster 136 →
Oculocutaneous albinism Waardenburg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TYR(6), MITF(7)
0.080 0.154 5.11e-5 2.30e-4 ✓ sig. —
Occupational disease Senile cataract
2 genes
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2 of 2 corroborated by 2+ sources
ERCC2(2), XRCC1(2)
0.080 0.154 5.11e-5 2.30e-4 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Myofibrillar myopathy
2 genes
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2 of 2 corroborated by 2+ sources
LDB3(3), BAG3(6)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. Cluster 4 →
Distal myopathy Frontotemporal dementia with or without amyotrophic lateral sclerosis
2 genes
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2 of 2 corroborated by 2+ sources
VCP(6), SQSTM1(7)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. —
Megaloblastic anemia Pancytopenia
2 genes
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2 of 2 corroborated by 2+ sources
TCN2(3), DHFR(6)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. —
Hydronephrosis Hyperemia
2 genes
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2 of 2 corroborated by 2+ sources
AGT(2), PTGS2(2)
0.080 0.167 5.04e-5 2.28e-4 ✓ sig. —
Benign prostatic hyperplasia Hemoglobin e disease
2 genes
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BCL11A(1), HBS1L(1)
0.051 0.400 5.00e-5 2.26e-4 ✓ sig. —
3m syndrome Desbuquois syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CCDC8(4), CUL7(5), OBSL1(3)
0.005 1.000 4.97e-5 2.25e-4 ✓ sig. —
Ataxia Episodic ataxia
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(5), CACNB4(5)
0.071 0.250 4.94e-5 2.23e-4 ✓ sig. —
Bone neoplasms Ruptured abdominal aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
MMP9(2), TGFBR2(2)
0.071 0.250 4.94e-5 2.23e-4 ✓ sig. —
Bone neoplasms Ruptured aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
MMP9(2), TGFBR2(2)
0.071 0.250 4.94e-5 2.23e-4 ✓ sig. —
Hemimegalencephaly Meningioma
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(3), PIK3CA(2)
0.067 0.286 4.87e-5 2.20e-4 ✓ sig. —
Anhydramnios Renal agenesis
2 genes
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1 of 2 corroborated by 2+ sources
EYA1(1), GREB1L(2)
0.080 0.182 4.85e-5 2.19e-4 ✓ sig. —
Melanocytic nevus Uterine prolapse
2 genes
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MAFF(1), PLA2G6(1)
0.080 0.182 4.85e-5 2.19e-4 ✓ sig. —
Leigh syndrome Thiamine metabolism dysfunction syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SLC25A19(4), TPK1(4)
0.019 1.000 4.78e-5 2.17e-4 ✓ sig. —
Encephalopathy due to mitochondrial and peroxisomal fission defect Leigh syndrome
2 genes
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2 of 2 corroborated by 2+ sources
DNM1L(3), MFF(2)
0.019 1.000 4.78e-5 2.17e-4 ✓ sig. —
Salivary gland neoplasms Weber-cockayne syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KRT5(2), ITGB4(2)
0.043 0.500 4.77e-5 2.16e-4 ✓ sig. —
Berardinelli-seip congenital lipodystrophy Epithelial ovarian carcinoma
2 genes
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2 of 2 corroborated by 2+ sources
FOS(2), CAV1(2)
0.061 0.333 4.76e-5 2.16e-4 ✓ sig. Cluster 71 →
Male breast carcinoma Triple negative breast cancer
2 genes
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MLLT10(1), CCDC170(1)
0.053 0.400 4.71e-5 2.14e-4 ✓ sig. —
Microcephaly Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TRMT10A(7), PPP1R15B(6)
0.019 1.000 4.69e-5 2.13e-4 ✓ sig. Cluster 101 →
Spondyloepiphyseal dysplasia Synovitis
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(8), WWP2(2)
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Bronchial disease Cardiac conduction disease
2 genes
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2 of 2 corroborated by 2+ sources
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Hepatic insufficiency Uremia
2 genes
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2 of 2 corroborated by 2+ sources
NOS3(2), TGFB1(2)
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.