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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cerebral saccular aneurysm Connective and soft tissue disorder
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 334 →
Cerebral saccular aneurysm Vascular ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 334 →
Cerebral saccular aneurysm ehlers-danlos syndrome, vascular type
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 334 →
Charcot-Marie-Tooth disease type 1A Paresthesia
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
CHEK2-related cancer predisposition Li-fraumeni syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHEK2(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 3 →
Chilblain lupus erythematosus Type i interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
TREX1(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 150 →
Childhood myocerebrohepatopathy spectrum Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis
1 gene
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1 of 1 corroborated by 2+ sources
POLG(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 97 →
Cholestasis-pigmentary retinopathy-cleft palate syndrome Simpson-golabi-behmel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED12(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 200 →
Cholesteatoma Middle ear cholesteatoma
1 gene
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IL2(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Anaplastic oligoastrocytoma Chordoma
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 304 →
Chordoma Gemistocytic astrocytoma
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 304 →
Chordoma Metaphyseal enchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
IDH1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Chordoma fanconi anemia complementation group n
1 gene
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1 of 1 corroborated by 2+ sources
PALB2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Choroid diseases Glucose-6-phosphate dehydrogenase deficiency
1 gene
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IL10(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Choroid diseases Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL10(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Choroideremia PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Choroideremia PRPF8-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPF8(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Choroideremia TOPORS-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TOPORS(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Christ-siemens-touraine syndrome ectodermal dysplasia 10b, hypohidrotic/hair/tooth type, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
EDAR(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 117 →
Christ-siemens-touraine syndrome familial acute necrotizing encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
RANBP2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Chromodomain helicase dna binding protein 8 overgrowth syndrome Congenital ptosis
1 gene
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CHD8(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 279 →
Chromosome 17p13.3 microdeletion syndrome Endometrial stromal sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 223 →
Chromosome 17p13.3 microdeletion syndrome Miller-dieker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 223 →
Chromosome 22q11.2 microduplication syndrome Velocardiofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 283 →
Chromosome xq26.3 duplication syndrome Growth hormone-secreting pituitary adenoma
1 gene
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1 of 1 corroborated by 2+ sources
GPR101(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 82 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.