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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Clubfoot Coxopodopatellar syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 24 →
Cockayne syndrome xeroderma pigmentosum group F
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Benign infantile epilepsy Cognitive impairment with or without cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Cognitive impairment with or without cerebellar ataxia Focal onset epileptic seizure
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
16q24.3 microdeletion syndrome Congenital retrognathism
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
17-beta-hydroxysteroid dehydrogenase deficiency Disorders of sex development
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B3(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 344 →
1p21.3 microdeletion syndrome Anal polyp
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 349 →
3-hydroxyacyl-coa dehydrogenase deficiency Congenital hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
HADH(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Adams-oliver syndrome NOTCH1-related AOS spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Adenomatous polyposis Brain tumor-polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
APC(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Adenomatous polyposis Familial adenomatous polyposis
1 gene
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1 of 1 corroborated by 2+ sources
APC(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Adenomatous polyposis gastric adenocarcinoma and proximal polyposis of the stomach
1 gene
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1 of 1 corroborated by 2+ sources
APC(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 41 →
Agat deficiency Fanconi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 99 →
Alpha-methylacyl-coa racemase deficiency Congenital bile acid synthesis defect
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Alpha-methylacyl-coa racemase deficiency Hereditary sensory and motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 190 →
amyotrophic lateral sclerosis type 1 Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Anal polyp Dihydropyrimidine dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 349 →
Anterior compartment syndrome Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 371 →
Anterior compartment syndrome Pancreatic diseases
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Aortic arch syndrome Autoimmune pulmonary alveolar proteinosis
1 gene
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1 of 1 corroborated by 2+ sources
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Aortic arch syndrome Heerfordt syndrome
1 gene
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0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Arboleda-tham syndrome Vein of galen aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
KAT6A(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Lobular carcinoma Sebastian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Lobular carcinoma macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma Lymphoproliferative disorder of natural killer cells
1 gene
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STAT3(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.