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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Adenomatous polyposis NTHL1-deficiency tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NTHL1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
NTHL1-deficiency tumor predisposition syndrome Tuberous sclerosis complex
1 gene
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1 of 1 corroborated by 2+ sources
NTHL1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 70 →
Congenital hyperinsulinism obsolete hyperinsulinism due to short chain 3-hydroxylacyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADH(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
obsolete Stüve-Wiedemann syndrome Stuve-wiedemann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LIFR(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Osteochondroma Right ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
PTPN11(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cafe-au-lait spots Osteoma cutis
1 gene
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1 of 1 corroborated by 2+ sources
GNAS(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypocalcemia Osteoma cutis
1 gene
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GNAS(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Other epidermolysis bullosa PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Other specified diabetes mellitus with unspecified complications Wolfram syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WFS1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Bilateral multicystic dysplastic kidney Ovarian mucinous adenocarcinoma
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Ovarian mucinous adenocarcinoma Renal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Giant cell tumor of tendon sheath Ovarian mucinous adenocarcinoma
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
Multicystic dysplastic kidney Ovarian mucinous adenocarcinoma
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 23 →
CDKL5 disorder Cyclin-dependent kinase-like 5 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CDKL5(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 61 →
CEP290-related ciliopathy Stuve-wiedemann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CEP290(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cerebellar ataxia with hearing loss Cerebellar dysfunction with variable cognitive and behavioral abnormalities
1 gene
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SLC9A1(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cerebellar ataxia with neuropathy and bilateral vestibular areflexia Hereditary sensory and motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 190 →
Cerebellar ataxia, intellectual disability, and dysequilibrium Cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
VLDLR(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 317 →
Cerebellar dysfunction with variable cognitive and behavioral abnormalities lichtenstein-knorr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cerebellar hypoplasia Dysequilibrium syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VLDLR(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 317 →
Cadasil cerebral arteriopathy, autosomal recessive, with subcortical infarcts and leukoencephalopathy 1
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH3(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cerebral cavernous malformation Rickets, x-linked hypophosphatemic
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cerebrofaciothoracic dysplasia Congenital musculoskeletal anomalies
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cerebrovascular trauma Paralytic strabismus
1 gene
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1 of 1 corroborated by 2+ sources
PHACTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cervical disc degenerative disorder Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.