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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Chiari-frommel syndrome obsolete early infantile epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GAD1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 325 →
Childhood apraxia of speech Russell-silver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 199 →
Childhood ataxia with cns hypomyelination leukoencephalopathy with vanishing white matter 3
1 gene
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1 of 1 corroborated by 2+ sources
EIF2B3(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 170 →
Childhood ataxia with cns hypomyelination leukoencephalopathy with vanishing white matter 1
1 gene
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1 of 1 corroborated by 2+ sources
EIF2B1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 170 →
Benign hereditary chorea Choreoacanthocytosis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 1 →
Chromophobe renal cell carcinoma Diabetes mellitus ketosis prone
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
ciliary dyskinesia, primary, 39 Epidermal nevus
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
Coasy protein-associated neurodegeneration Hallervorden spatz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COASY(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Coats disease Exudative retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cobalamin c disease Cobalamin metabolism disorder
1 gene
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MMADHC(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cobalamin c disease inborn disorder of cobalamin metabolism and transport
1 gene
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1 of 1 corroborated by 2+ sources
MMADHC(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cobalamin c disease methylmalonic acidemia with homocystinuria, type cblJ
1 gene
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1 of 1 corroborated by 2+ sources
ABCD4(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 246 →
Coenzyme a synthase protein associated neurodegeneration Hallervorden spatz syndrome
1 gene
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COASY(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hereditary hemorrhagic telangiectasia Myhre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital muscular dystrophy due to dystroglycanopathy myopathy caused by variation in CRPPA
1 gene
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1 of 1 corroborated by 2+ sources
CRPPA(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 14 →
Congenital muscular dystrophy due to dystroglycanopathy myopathy caused by variation in FKRP
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 14 →
Congenital muscular dystrophy due to dystroglycanopathy myopathy caused by variation in POMGNT1
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 14 →
Nausea Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Eye pain Nausea
1 gene
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POMC(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hallervorden spatz syndrome neurodegeneration with brain iron accumulation 4
1 gene
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1 of 1 corroborated by 2+ sources
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 92 →
Iron overload neurodegeneration with brain iron accumulation 9
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Epidermal nevus Neurofibrosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NRAS(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
Neurofibrosarcoma Nonmedullary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
NRAS(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
Distal muscular dystrophy neuronopathy, distal hereditary motor, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
HSPB8(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Benign hereditary chorea NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.