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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bone marrow failure syndromes Choroid plexus carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Bone marrow failure syndromes Choroid plexus papilloma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Bone marrow neoplasms Optic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CSF3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac-urogenital syndrome Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(7)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac-urogenital syndrome Urogenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac conduction disease Cardiogenetic disease
1 gene
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1 of 1 corroborated by 2+ sources
CACNB2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiogenetic disease Congenital esophageal anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CACNB2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 404 →
Benign pemphigus P5CS deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Darier disease P5CS deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Optic neuropathy Periodic paralysis with later-onset distal motor neuropathy
1 gene
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ATP8(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 32 →
Haddad syndrome Phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital central hypoventilation syndrome Phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
platelet-type bleeding disorder 11 Von willebrand disorder
1 gene
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1 of 1 corroborated by 2+ sources
GP6(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
platelet-type bleeding disorder 8 Von willebrand disorder
1 gene
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1 of 1 corroborated by 2+ sources
P2RY12(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 266 →
platelet-type von Willebrand disease Von willebrand disorder
1 gene
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1 of 1 corroborated by 2+ sources
GP1BA(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 266 →
polycystic liver disease 2 Tubulointerstitial kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
SEC63(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 23 →
Polynesian bronchiectasis primary ciliary dyskinesia 3
1 gene
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1 of 1 corroborated by 2+ sources
DNAH5(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
Polynesian bronchiectasis primary ciliary dyskinesia 15
1 gene
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1 of 1 corroborated by 2+ sources
CCDC40(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
primary ciliary dyskinesia spermatogenic failure 56
1 gene
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DNAH10(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 133 →
primary ciliary dyskinesia Young syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFAP221(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 133 →
primary ciliary dyskinesia spermatogenic failure 19
1 gene
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CFAP43(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 133 →
primary ciliary dyskinesia spermatogenic failure 18
1 gene
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DNAH1(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Polynesian bronchiectasis primary ciliary dyskinesia 1
1 gene
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1 of 1 corroborated by 2+ sources
DNAI1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →
Ellis-van creveld syndrome primary ciliary dyskinesia 14
1 gene
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1 of 1 corroborated by 2+ sources
CCDC39(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 289 →
Polynesian bronchiectasis primary ciliary dyskinesia 17
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF19(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 9 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.