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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Conjunctivitis Laryngeal disease
1 gene
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1 of 1 corroborated by 2+ sources
PLG(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 155 →
Congenital malformation syndromes associated with short stature Corpus callosum agenesis
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
De lange syndrome Wilson-turner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HDAC8(3)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 297 →
Deafness, sensorineural, autosomal-mitochondrial type Wolfram syndrome
1 gene
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ND1(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Demyelinating hereditary motor and sensory neuropathy Proximal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
FBLN5(3)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Aortic arch syndrome Parapsoriasis
1 gene
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1 of 1 corroborated by 2+ sources
HLA-A(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Periapical periodontitis Skin ulcer
1 gene
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1 of 1 corroborated by 2+ sources
FGF2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 330 →
Contracture of multiple joints Posterior column ataxia with retinitis pigmentosa
1 gene
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FLVCR2(1)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Cervical disc degenerative disorder Pyogenic arthritis-pyoderma gangrenosum-acne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Exanthema Recurrent multifocal osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
IL1RN(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 216 →
Atrioventricular excitation abnormality Bile duct disorder
1 gene
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1 of 1 corroborated by 2+ sources
PRKAG2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 318 →
Autoimmune interstitial lung disease-arthritis syndrome Cold autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP12(4)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Benign hypercalcemia Hypocalcemia
1 gene
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1 of 1 corroborated by 2+ sources
CASR(7)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Benign myoclonic epilepsy Cri-du-chat syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CTNND2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Bifid uvula Van der woude syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Bile duct disease Erythropoietic protoporphyria
1 gene
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1 of 1 corroborated by 2+ sources
FECH(8)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 158 →
Blepharocheilodontic syndrome Trigeminal nerve disease
1 gene
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1 of 1 corroborated by 2+ sources
CTNND1(7)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 312 →
Blepharocheilodontic syndrome Lobular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Brachydactyly-elbow wrist dysplasia syndrome Clubfoot
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Axenfeld-rieger syndrome Brittle cornea syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRDM5(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Carey-fineman-ziter syndrome Major salivary gland carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MYMK(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Carotid atherosclerosis Rhabdoid tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(6)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 120 →
Carotid atherosclerosis Thoracic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. Cluster 120 →
Congenital malformation syndromes associated with short stature Urethral syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —
Aortic arch syndrome Vaginal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL2(2)
0.125 0.500 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.