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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ataxia with polyneuropathy Bicuspid aortic valve
1 gene
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ATP6(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
ATP1A3-associated neurological disorder Congenital epicanthus
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 238 →
Atrial and intestinal dysrhythmia Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
SGO1(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Atrophoderma vermiculata Developmental dysplasia of the hip
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 194 →
autoimmune lymphoproliferative syndrome type 1 Testicular disease
1 gene
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1 of 1 corroborated by 2+ sources
FASLG(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal dominant cerebellar ataxia Vascular brain injury
1 gene
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1 of 1 corroborated by 2+ sources
NPTX1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 94 →
autosomal recessive limb-girdle muscular dystrophy Intellectual developmental disorder movement cerebellar
1 gene
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1 of 1 corroborated by 2+ sources
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal recessive osteopetrosis 3 Cholangitis
1 gene
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1 of 1 corroborated by 2+ sources
CA2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Axial spondylometaphyseal dysplasia Spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CFAP410(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 21 →
autosomal recessive limb-girdle muscular dystrophy bardet-biedl syndrome 11
1 gene
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TRIM32(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Behavior disorders Fatigue syndrome
1 gene
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SLC6A4(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 156 →
Benign concentric annular macular dystrophy Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Benign fasciculation-cramp syndrome Bronchial hyperreactivity
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 206 →
autosomal recessive limb-girdle muscular dystrophy Beta-sarcoglycanopathy
1 gene
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1 of 1 corroborated by 2+ sources
SGCB(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Bilateral congenital mydriasis
1 gene
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ITPR1(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hyperopia Seborrheic dermatitis
3 genes
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1 of 3 corroborated by 2+ sources
PRICKLE2(1), MYRF(2), SGPL1(1)
0.026 0.081 8.91e-4 1.58e-3 ✓ sig. —
Hemorrhoid Ileocolitis
2 genes
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PHLDB2(1), PLCXD2(1)
0.021 0.250 9.04e-4 1.58e-3 ✓ sig. —
Developmental regression Vesicoureteral reflux
2 genes
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1 of 2 corroborated by 2+ sources
NDUFAF6(2), EBF3(1)
0.036 0.111 8.85e-4 1.57e-3 ✓ sig. Cluster 323 →
Hypertriglyceridemia Williams syndrome
2 genes
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2 of 2 corroborated by 2+ sources
BAZ1B(4), TBL2(3)
0.039 0.083 8.59e-4 1.52e-3 ✓ sig. —
Basal ganglia disease Thiamine-responsive encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Essential thrombocythemia Thrombocythemia with distal limb defects
1 gene
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1 of 1 corroborated by 2+ sources
THPO(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 53 →
Platelet disorder thrombocytopenia 2
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD26(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Platelet disorder TPM4-related platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
TPM4(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 33 →
Congenital abnormalities Upper extremity deformity, congenital
1 gene
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1 of 1 corroborated by 2+ sources
EZH2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Steroid-resistant nephrotic syndrome Ventriculomegaly with cystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.