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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Adult myoclonic epilepsy Early onset epilepsy with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 357 →
15q11.2 microdeletion syndrome Complex cortical dysplasia with other brain malformations
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 176 →
3-methylglutaconic aciduria Mitochondrial encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TIMM50(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Cholestasis Metachromatic leukodystrophy
1 gene
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YARS1(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Chromosome 22q11.2 microdeletion syndrome Liver cancer
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Circadian rhythm sleep disorder Pernicious anemia
1 gene
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CNTN5(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Cleidocranial dysplasia Facial nerve disorder
1 gene
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1 of 1 corroborated by 2+ sources
SUPT3H(2)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Coronal craniosynostosis Robinow syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(4)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 127 →
Spermatogenic failure, x-linked Synovial sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
SSX1(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Charcot-marie-tooth disease, x-linked Spinocerebellar ataxia, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
GJB1(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Penile hypospadia Synpolydactyly
1 gene
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1 of 1 corroborated by 2+ sources
HOXD13(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Infertility Olmsted syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(2)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 242 →
Complex cortical dysplasia with other brain malformations lissencephaly spectrum disorders
1 gene
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1 of 1 corroborated by 2+ sources
TUBG1(3)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 176 →
Benign mucous membrane pemphigoid with ocular involvement Liver cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Metaphyseal chondrodysplasia Metaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
MMP13(6)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Hemophagocytic lymphohistiocytosis Microvillus inclusion disease
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(7)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Bulbar palsy Episodic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1A(5)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. Cluster 61 →
Cryptogenic west syndrome Fatty acid metabolism disorder
1 gene
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HSD17B4(1)
0.091 0.333 1.56e-3 2.38e-3 ✓ sig. —
Growth hormone insensitivity syndrome Specific learning disability
1 gene
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GHR(1)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Growth hormone insensitivity, partial Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
GHR(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Hereditary corneal dystrophy Thiel-behnke corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(4)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune pancreatitis Thyrotoxic periodic paralysis
1 gene
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1 of 1 corroborated by 2+ sources
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 1 →
Thyrotoxic periodic paralysis Tongue cancer
1 gene
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0.071 0.500 1.56e-3 2.38e-3 ✓ sig. Cluster 1 →
Renovascular hypertension Vestibular disease
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —
Tonic-clonic epilepsy Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.071 0.500 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.