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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
ciliary dyskinesia, primary, 46 Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
STK36(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. Cluster 96 →
Dihydropyrimidine dehydrogenase deficiency Head and neck neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(6)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Duplication of pituitary gland Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
PTCH2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Early-onset hypertension with severe exacerbation in pregnancy Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Hypogonadotropic hypogonadism POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
pseudohyperaldosteronism type 2 Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Pseudohypoaldosteronism Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Gastrointestinal stromal tumor RAB23-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Head and neck neoplasms Hepatoerythropoietic porphyria
1 gene
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1 of 1 corroborated by 2+ sources
UROD(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
hereditary mixed polyposis syndrome Neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
GREM1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. Cluster 20 →
holt-oram syndrome Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
TBX5(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Head and neck neoplasms hyper-ige syndrome 6, autosomal dominant, with recurrent infections
1 gene
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1 of 1 corroborated by 2+ sources
STAT6(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Head and neck neoplasms hypercholesterolemia, familial, 4
1 gene
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1 of 1 corroborated by 2+ sources
LDLRAP1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Congenital alveolar capillary dysplasia Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Congenital insufficiency of mitral valve Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
LMCD1(3)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Farber disease Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
ASAH1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Female restricted epilepsy with intellectual disability Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PCDH19(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. Cluster 47 →
Anti-neutrophil antibody associated vasculitis Factor viii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F8(3)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Diffuse cutaneous systemic sclerosis Fetal erythroblastosis
1 gene
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FCGR2A(1)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
immunodeficiency 104 Nasal disorder
1 gene
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1 of 1 corroborated by 2+ sources
IL7R(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. Cluster 137 →
Intellectual developmental disorder dysmorphic microcephaly Skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COPB1(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Bullous pemphigoid Syndactyly of the toes
1 gene
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1 of 1 corroborated by 2+ sources
DHCR7(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Congenital impairment of spermatozoa motility Male infertility teratozoospermia
1 gene
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CFAP251(1)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. Cluster 31 →
Microscopic colitis Nasal disorder
1 gene
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CLEC16A(1)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Corneal endothelial dystrophy Fuchs endothelial dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A11(5)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. Cluster 75 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.