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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Movement disorder Willis-ekbom disease
10 genes
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4 of 10 corroborated by 2+ sources
BTBD9(3), CNTNAP5(1), MAP2K5(1), PTPRD(3), GSTM1(2), MYT1(1), MEIS1(3), CCDC148(1), STK33(1), LMO1(1)
0.042 0.175 1.77e-9 1.57e-8 ✓ sig. —
Aplastic anemia Dyskeratosis congenita
5 genes
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3 of 5 corroborated by 2+ sources
ACD(6), TERT(8), ZCCHC8(1), POT1(1), DKC1(7)
0.093 0.192 1.78e-9 1.58e-8 ✓ sig. Cluster 64 →
Congestive ophthalmopathy Dermatologic disorder
5 genes
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SCD(1), IL10(1), TNF(1), PTGS2(1), IL1RN(1)
0.065 0.385 1.81e-9 1.60e-8 ✓ sig. —
Dermatologic disorder Myopathic ophthalmopathy
5 genes
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SCD(1), IL10(1), TNF(1), PTGS2(1), IL1RN(1)
0.065 0.385 1.81e-9 1.60e-8 ✓ sig. —
Gonadal dysgenesis Swyer syndrome
4 genes
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2 of 4 corroborated by 2+ sources
NR5A1(2), SRY(2), DHH(1), DHX37(1)
0.114 0.400 1.82e-9 1.61e-8 ✓ sig. Cluster 38 →
Hemoglobinuria paroxysmal Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), C3(2), HLA-DQB1(2)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 1 →
46,xx ovotesticular disorder of sex development 46,xy partial gonadal dysgenesis
3 genes
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1 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(1), SRY(1)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 38 →
Cold paroxysmal hemoglobinuria Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), C3(2), HLA-DQB1(2)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 1 →
Paroxysmal nocturnal hemoglobinuria Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), C3(2), HLA-DQB1(2)
0.250 0.500 1.84e-9 1.62e-8 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Diffuse cutaneous systemic sclerosis
4 genes
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3 of 4 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), STAT4(2), TNPO3(1)
0.125 0.333 1.86e-9 1.64e-8 ✓ sig. —
Curling ulcer Gastric ulcer
4 genes
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2 of 4 corroborated by 2+ sources
PTGS2(1), ABO(2), NOS2(1), PSCA(2)
0.071 0.667 1.87e-9 1.64e-8 ✓ sig. —
Myeloproliferative disorder Thrombocythemia
4 genes
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4 of 4 corroborated by 2+ sources
SH2B3(4), MPL(6), JAK2(6), CALR(4)
0.071 0.667 1.87e-9 1.64e-8 ✓ sig. Cluster 53 →
Myeloproliferative disorder Thrombocytosis
4 genes
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4 of 4 corroborated by 2+ sources
SH2B3(3), MPL(4), JAK2(4), CALR(2)
0.071 0.667 1.87e-9 1.64e-8 ✓ sig. Cluster 53 →
Antiphospholipid syndrome Bouillaud’s disease
3 genes
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0.143 1.000 1.87e-9 1.65e-8 ✓ sig. Cluster 1 →
Alport syndrome Steroid-resistant nephrotic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(3), COL4A3(6), COL4A4(6)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 49 →
Liddle syndrome Pseudohypoparathyroidism
3 genes
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3 of 3 corroborated by 2+ sources
SCNN1A(7), SCNN1B(7), SCNN1G(8)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 95 →
Alport syndrome, x-linked Steroid-resistant nephrotic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL4A5(4), COL4A3(2), COL4A4(2)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 49 →
Heimler syndrome Zellweger spectrum disorder
3 genes
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2 of 3 corroborated by 2+ sources
PEX6(5), PEX1(4), PEX26(1)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. —
Hypercalcemia Idiopathic infantile hypercalcemia
3 genes
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3 of 3 corroborated by 2+ sources
KL(2), SLC34A1(6), CYP24A1(5)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 262 →
Hypercalcemia Kidney and ureter calculus
3 genes
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3 of 3 corroborated by 2+ sources
CASR(2), SLC34A1(2), CYP24A1(2)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 262 →
Hyperhomocysteinemia Neural tube defects, folate-sensitive
3 genes
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3 of 3 corroborated by 2+ sources
MTHFR(3), MTRR(3), MTR(2)
0.200 0.750 1.88e-9 1.65e-8 ✓ sig. Cluster 121 →
Autoinflammatory syndrome Hemophagocytic lymphohistiocytosis
4 genes
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4 of 4 corroborated by 2+ sources
PRF1(7), UNC13D(7), STX11(6), STXBP2(7)
0.095 0.500 1.96e-9 1.72e-8 ✓ sig. —
46,xx sex reversal Swyer syndrome
3 genes
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3 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(2), SRY(3)
0.231 0.600 1.97e-9 1.73e-8 ✓ sig. Cluster 38 →
Cornelia de lange syndrome Wiedemann-steiner syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KMT2A(6), SMC1A(4), SMC3(6)
0.231 0.600 1.97e-9 1.73e-8 ✓ sig. Cluster 297 →
Hypochromic microcytic anemia Iron deficiency anemia
3 genes
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2 of 3 corroborated by 2+ sources
TF(2), TNF(1), SLC11A2(3)
0.231 0.600 1.97e-9 1.73e-8 ✓ sig. Cluster 227 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.