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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Jeune syndrome short-rib thoracic dysplasia 16 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT52(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 22 →
Jeune syndrome short-rib thoracic dysplasia 17 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNLT2B(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 22 →
Brain disease succinic semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH5A1(3)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Chronic obstructive pulmonary disease susceptibility to respiratory infections associated with CD8alpha chain mutation
1 gene
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1 of 1 corroborated by 2+ sources
CD8A(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 119 →
Congenital absence of breast with absent nipple Hyperinsulinism
1 gene
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PTPRF(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Congenital alveolar capillary dysplasia Ventricular septal defect
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Brain disease Congenital brain dysgenesis due to glutamine synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLUL(6)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Chronic obstructive pulmonary disease Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(5)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Proteinuria X-linked nephrolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(4)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Brain disease Xerosis with immune and pulmonary dysfunction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DBR1(4)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Brain disease Xgip syndrome
1 gene
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DBR1(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Autoimmune enteropathy and endocrinopathy Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
STAT1(5)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Autoinflammation with arthritis and vasculitis Brain disease
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(4)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Autoinflammation, immune dysregulation, and eosinophilia Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
JAK1(5)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Hypospadias idiopathic multidrug-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAAM2(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
immunodeficiency 31b Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
STAT1(3)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
KIZ-related retinopathy Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
KIZ(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 1 →
Laryngeal hypoplasia Ventricular septal defect
1 gene
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FOXP4(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Proteinuria pseudohypoaldosteronism, type IB1, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
SCNN1A(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Erythrocyte lactate transporter defect Hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(3)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Fanconi anemia complementation group A Hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(3)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Fatty acid and ketone body metabolism disorder Hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A1(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Fatty acid oxidation and ketone body metabolism disorder Hyperinsulinism
1 gene
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SLC16A1(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Brain disease frontotemporal dementia and/or amyotrophic lateral sclerosis 4
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Hereditary c1 esterase inhibitor deficiency Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.