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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital vertebral-cardiac-renal anomalies syndrome Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
NADSYN1(3)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Corneal ulcer Hennekam syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCBE1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Imerslund-grasbeck syndrome Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
CUBN(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 106 →
Benign mucous membrane pemphigoid with ocular involvement Follicular lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 1 →
Bouillaud’s disease Follicular lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 1 →
overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
progressive myoclonus epilepsy Right atrial isomerism
1 gene
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1 of 1 corroborated by 2+ sources
CERS1(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Haddad syndrome Hyperphenylalaninemia
1 gene
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PAH(1)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Hashimoto disease hyper-IgE recurrent infection syndrome 5, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
IL6R(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Hyperinsulinism-hyperammonemia syndrome Hypoglycemia
1 gene
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1 of 1 corroborated by 2+ sources
GLUD1(5)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 36 →
Hepatolenticular degeneration hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase
1 gene
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1 of 1 corroborated by 2+ sources
AHCY(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Hypoglycemia hypoinsulinemic hypoglycemia and body hemihypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Ruijs-aalfs syndrome Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
SPRTN(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 31 →
Bladder exstrophy and epispadias complex Schopf-schulz-passarge syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Rhabdomyosarcoma Sertoli-leydig cell tumor of ovary
1 gene
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1 of 1 corroborated by 2+ sources
DICER1(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Rhabdomyosarcoma SETD2-related microcephaly-severe intellectual disability-multiple congenital anomalies syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETD2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Rhabdomyosarcoma SETD2-related neurodevelopmental disorder without or with macrocephaly/overgrowth
1 gene
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1 of 1 corroborated by 2+ sources
SETD2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
severe combined immunodeficiency due to CARD11 deficiency Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Sezary syndrome snijders blok-campeau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD3(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 3 →
spermatogenic failure 18 Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
DNAH1(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
spermatogenic failure 38 Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
ARMC2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. Cluster 31 →
spermatogenic failure 56 Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
DNAH10(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Hashimoto disease spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(2)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
spinocerebellar ataxia, autosomal recessive 25 Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
ATG5(3)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —
Hashimoto disease Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(4)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.