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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cryohydrocytosis Distal renal tubular acidosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(7)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Donnai-barrow syndrome Intracellular cobalamin metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Chondrosarcoma Eosinophilic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRA(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Imperforate anus Peripheral pulmonary artery stenosis
1 gene
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CUL9(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Peritoneal disease Soft tissue neoplasms
1 gene
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ERBB4(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Bone marrow failure syndromes Primary cutaneous anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
NPM1(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Hypercapnia Small cell carcinoma
1 gene
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NPPA(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Asperger syndrome Post-operative myocardial infarction
1 gene
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FHIT(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Autoinflammatory disease, familial, behcet-like 3 Hepatic insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Benign pemphigus Complex spastic paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Complex spastic paraplegia Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cone-rod synaptic disorder Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CABP4(4)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Congenital factor xiii deficiency Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
F13A1(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cebalid syndrome Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Chediak-higashi syndrome Optic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
LYST(7)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cataract-microcornea syndrome Chromosome 1q21.1 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(6)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Bombay phenotype Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
FUT2(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 106 →
Normal pressure hydrocephalus primary ciliary dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
CFAP43(4)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 133 →
MYH-6 related congenital heart defects Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
MYPN-related myopathy Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
nance-horan syndrome Nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
NHS(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 43 →
Anorexia Nasal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Junctional epidermolysis bullosa Naxos disease
1 gene
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1 of 1 corroborated by 2+ sources
JUP(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Nemaline myopathy nemaline myopathy 10
1 gene
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1 of 1 corroborated by 2+ sources
LMOD3(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 51 →
Nemaline myopathy nemaline myopathy 5
1 gene
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1 of 1 corroborated by 2+ sources
TNNT1(6)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.