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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autosomal recessive limb-girdle muscular dystrophy bardet-biedl syndrome 11
1 gene
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TRIM32(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Behavior disorders Fatigue syndrome
1 gene
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SLC6A4(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 156 →
Benign concentric annular macular dystrophy Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 303 →
Benign fasciculation-cramp syndrome Bronchial hyperreactivity
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 206 →
autosomal recessive limb-girdle muscular dystrophy Beta-sarcoglycanopathy
1 gene
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1 of 1 corroborated by 2+ sources
SGCB(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Bilateral congenital mydriasis
1 gene
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ITPR1(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Blau syndrome Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 382 →
Bmp4-related ocular growth disorder Cartilage disease
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bmp4-related ocular growth disorder Stickler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Brunner syndrome Hepatic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 57 →
Burnett schwartz berberian syndrome Developmental dysplasia of the hip
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 194 →
Camptodactyly Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
TLN2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cancer, alopecia, pigment dyscrasia, onychodystrophy, and keratoderma Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
SASH1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Capos syndrome Congenital epicanthus
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 238 →
Bicuspid aortic valve Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome due to tab2 mutation
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
Arrhythmogenic right ventricular dysplasia cardiomyopathy, dilated, 2l
1 gene
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1 of 1 corroborated by 2+ sources
LDB3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
cataract 50 with or without glaucoma Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
FAS-related autoimmune lymphoproliferative immune disorder Lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FAS(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Hyper-ige syndrome Lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Lymphoproliferative syndrome lymphoproliferative syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
ITK(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Lymphoproliferative syndrome lymphoproliferative syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CD27(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital hypothyroidism macrothrombocytopenia, isolated, 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
TUBB1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Malabsorption syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 411 →
MECOM-associated syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
MECOM(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 411 →
Congenital hydrocephalus medium chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADM(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.