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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Normal pressure hydrocephalus Ptosis
1 gene
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PMPCA(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 133 →
Cone-rod dystrophy, x-linked Ocular albinism
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1F(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 84 →
Oculoauricular syndrome Oculopalatosekeletal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FADD(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Oculopharyngeal muscular dystrophy Vacuolar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Nephrotic syndrome, focal segmental type Renal hypoplasia
1 gene
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PAX2(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Autoimmune pancreatitis Respiratory system neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 1 →
Respiratory system neoplasm Tongue cancer
1 gene
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0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 1 →
Respiratory system neoplasm Wernicke-korsakoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Retinal cone dystrophy Vitreoretinochoroidopathy
1 gene
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1 of 1 corroborated by 2+ sources
BEST1(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Choroidal dystrophy Retinal cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2D(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 45 →
Paroxysmal dyskinesia Seizures, tonic-clonic, photosensitive
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ10(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 58 →
Coach syndrome Senior-boichis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMEM67(6)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 306 →
Commissural facial cleft Teebi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPECC1L(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 203 →
12q14 microdeletion syndrome Tietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LEMD3(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 175 →
Hyperuricemic nephropathy Tonne-kalscheuer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Hyperkalemia Urinary bladder diseases
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 112 →
22q13 monosomy syndrome Urinary bladder diseases
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 112 →
Common arterial trunk with aortic dominance Velocardiofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 283 →
Common arterial trunk with pulmonary dominance and interrupted aortic arch Velocardiofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 283 →
Arachnodactyly Visual system disorder
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Telomere syndrome X-linked dyskeratosis congenita
1 gene
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RTEL1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 64 →
Ocular albinism X-linked ocular abinism
1 gene
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1 of 1 corroborated by 2+ sources
GPR143(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Xeroderma pigmentosum-cockayne syndrome Xfe progeroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(6)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Colobomatous optic disc macular atrophy chorioretinopathy syndrome Retinoschisis
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Colonic polyps Immune system disorder
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 255 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.